View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0340_low_11 (Length: 294)

Name: NF0340_low_11
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0340_low_11
NF0340_low_11
[»] chr5 (5 HSPs)
chr5 (35-105)||(21388436-21388506)
chr5 (35-105)||(18694482-18694552)
chr5 (75-109)||(12830262-12830296)
chr5 (75-109)||(12862242-12862276)
chr5 (75-109)||(22818841-22818875)
[»] chr1 (5 HSPs)
chr1 (1-72)||(45570918-45570992)
chr1 (35-105)||(50679113-50679183)
chr1 (212-255)||(5390871-5390914)
chr1 (212-255)||(5394409-5394452)
chr1 (212-255)||(5399590-5399633)
[»] chr2 (1 HSPs)
chr2 (45-109)||(3527533-3527598)
[»] chr7 (3 HSPs)
chr7 (38-105)||(27071467-27071535)
chr7 (38-105)||(27206778-27206846)
chr7 (38-105)||(26006336-26006404)
[»] chr3 (1 HSPs)
chr3 (38-105)||(24376031-24376099)
[»] chr4 (1 HSPs)
chr4 (75-109)||(44159757-44159791)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 21388436 - 21388506
Alignment:
Q  35 aactcatcttcaacaacagtgaaattcttctttctctaattccatttaaattctcagaattccaacaacaa 105  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  21388436 aactcattatcaacaacagtgaaattctcctttctctaattccatttaaattctcaaaattccaacaacaa 21388506  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 18694482 - 18694552
Alignment:
Q  35 aactcatcttcaacaacagtgaaattcttctttctctaattccatttaaattctcagaattccaacaacaa 105  Q
    |||||||  |||||||||  ||||||||  |||||||||||||||||||||||||  ||||||||||||||    
T  18694482 aactcattatcaacaacatcgaaattctcatttctctaattccatttaaattctccaaattccaacaacaa 18694552  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 12830296 - 12830262
Alignment:
Q  75 tccatttaaattctcagaattccaacaacaatttc 109  Q
    |||||||||||||||| ||||||||||||||||||    
T  12830296 tccatttaaattctcaaaattccaacaacaatttc 12830262  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 12862276 - 12862242
Alignment:
Q  75 tccatttaaattctcagaattccaacaacaatttc 109  Q
    |||||||||||||||| ||||||||||||||||||    
T  12862276 tccatttaaattctcaaaattccaacaacaatttc 12862242  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 22818875 - 22818841
Alignment:
Q  75 tccatttaaattctcagaattccaacaacaatttc 109  Q
    |||||||||||||||| ||||||||||||||||||    
T  22818875 tccatttaaattctcaaaattccaacaacaatttc 22818841  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 45570918 - 45570992
Alignment:
Q  1 cccatttaaaattcaaaatccatcaccactatataa---ctcatcttcaacaacagtgaaattcttctttctcta 72  Q
    ||||||| |||||||||||||||||||| |||||||   ||||||||||||||||||||||||||| ||||||||    
T  45570918 cccatttgaaattcaaaatccatcaccattatataataactcatcttcaacaacagtgaaattcttttttctcta 45570992  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 50679113 - 50679183
Alignment:
Q  35 aactcatcttcaacaacagtgaaattcttctttctctaattccatttaaattctcagaattccaacaacaa 105  Q
    |||||||  ||||||||| |||||||||  ||||||||||||||| |||||||||| |||| |||||||||    
T  50679113 aactcattatcaacaacaatgaaattctcatttctctaattccatataaattctcaaaatttcaacaacaa 50679183  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 5390871 - 5390914
Alignment:
Q  212 cattctccctcacagtctcttcccacacaacacccatatccttc 255  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||    
T  5390871 cattctccctcacaatctcttcccacacaccacccttatccttc 5390914  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 5394409 - 5394452
Alignment:
Q  212 cattctccctcacagtctcttcccacacaacacccatatccttc 255  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||    
T  5394409 cattctccctcacaatctcttcccacacaccacccttatccttc 5394452  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 5399590 - 5399633
Alignment:
Q  212 cattctccctcacagtctcttcccacacaacacccatatccttc 255  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||    
T  5399590 cattctccctcacaatctcttcccacacaccacccttatccttc 5399633  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 3527533 - 3527598
Alignment:
Q  45 caacaacagtgaaattcttctttctctaattccatttaaattctcag-aattccaacaacaatttc 109  Q
    |||||||| |||||||||  ||||| |||||||| |||||||||||| ||||||||||||||||||    
T  3527533 caacaacaatgaaattctcatttctttaattccacttaaattctcagaaattccaacaacaatttc 3527598  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 27071467 - 27071535
Alignment:
Q  38 tcatcttcaacaacagtgaaattcttctttctctaattccatttaaa-ttctcagaattccaacaacaa 105  Q
    ||||||||||||||| ||||| ||   ||| |||||||| ||||||| |||||||||||||||||||||    
T  27071467 tcatcttcaacaacactgaaactcccatttttctaattctatttaaaattctcagaattccaacaacaa 27071535  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 27206846 - 27206778
Alignment:
Q  38 tcatcttcaacaacagtgaaattcttctttctctaattccatttaaa-ttctcagaattccaacaacaa 105  Q
    ||||||||||||||| ||||| ||   ||| |||||||| ||||||| |||||||||||||||||||||    
T  27206846 tcatcttcaacaacactgaaactcccatttttctaattctatttaaaattctcagaattccaacaacaa 27206778  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 26006404 - 26006336
Alignment:
Q  38 tcatcttcaacaacagtgaaattcttctttctctaattccatttaaa-ttctcagaattccaacaacaa 105  Q
    ||||| ||||||||| ||||| ||   ||| |||||||| ||||||| |||||||||||||||||||||    
T  26006404 tcatcatcaacaacactgaaactcccatttttctaattctatttaaaattctcagaattccaacaacaa 26006336  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 24376099 - 24376031
Alignment:
Q  38 tcatcttcaacaacagtgaaattcttctttctctaattccatttaaa-ttctcagaattccaacaacaa 105  Q
    ||||||||||||||| ||||| ||   ||| |||||||| ||||||| |||||||||||||||||||||    
T  24376099 tcatcttcaacaacactgaaactcccatttttctaattctatttaaaattctcagaattccaacaacaa 24376031  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 44159757 - 44159791
Alignment:
Q  75 tccatttaaattctcagaattccaacaacaatttc 109  Q
    |||||||||||||||| ||||||||||||||||||    
T  44159757 tccatttaaattctcaaaattccaacaacaatttc 44159791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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