View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0340_low_5 (Length: 493)
Name: NF0340_low_5
Description: NF0340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0340_low_5 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 2630895 - 2631349
Alignment:
| Q |
10 |
gcacagacaagaaccctactccatcaatcaagaccattgatgtgatctccaacgaactcccgtgtttgtcgccgggtttcacggaaacactcgcaaacga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
2630895 |
gcacagacaagaaccctactccatcaatcaagaccattgatgtgatctccaacgaactcccgtgtttgtcgtcgggcttcacggaaacactcgcaaacga |
2630994 |
T |
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| Q |
110 |
gaccttacagaaagggggttatgcgccacaataaggacaagatgcacatttctaccgctttcaaggcctcagcctatatcttacaaaacgggggcatgga |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630995 |
gaccttacagcaagggggttatgcgccacaataaggacaagatgcacatttctaccgctttcaaggcctcagcctatatcttacaaaacgggggcatgga |
2631094 |
T |
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| Q |
210 |
gatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagggcagcgtaggtgtctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631095 |
gatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagggcagcgtaggtgtctt |
2631194 |
T |
|
| Q |
310 |
tcacactagttctttcgaagaaacataaacataaattgaaacaagcccaagtgcttgggaagtcgccgtatctaacccgttctaggcgggactcctctcc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2631195 |
tcacactagttctttcgaagaaacataaacataaattgaaacaagcccaagtgcttcggaagtcgccgtatctaacccgttctaggtgggactcctctcc |
2631294 |
T |
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| Q |
410 |
aactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggatt |
464 |
Q |
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| T |
2631295 |
aactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggatt |
2631349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 204 - 464
Target Start/End: Original strand, 5839 - 6095
Alignment:
| Q |
204 |
catggagatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagggcagcgtagg |
303 |
Q |
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||||| ||||||||||| ||||| |||| |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||| | ||||| ||| |
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| T |
5839 |
catggcgatggtctagtacagca---tattaatcctaacatacaacatgatatggacctttggcaaagaatatgtgagtatgataaaggaacagcggagg |
5935 |
T |
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| Q |
304 |
tgtctttcacactagttctttcgaagaaacataaacataaattgaaacaagcccaagtgcttgggaagtcgccgtatctaacccgttctaggcgggactc |
403 |
Q |
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| T |
5936 |
tttctttcactccagttctttcaaataaacaacaacaaaaattgaaacaagcataggttcttgggaagccgctacatcaaacccgttatagg-gggactc |
6034 |
T |
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| Q |
404 |
ctctccaactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggatt |
464 |
Q |
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| T |
6035 |
cacttcaactgctcaataaatattttttattggaatgtgcgaggtattggtaactcggatt |
6095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 204 - 464
Target Start/End: Complemental strand, 5569906 - 5569651
Alignment:
| Q |
204 |
catggagatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagggcagcgtagg |
303 |
Q |
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||||||||||||| ||||||||| |||| |||||||| ||||||| ||||||||||||| || ||||| ||| ||| ||||||||| | ||| |
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| T |
5569906 |
catggagatggtccagtgcagca---tattaatcctaacatacaacaggatatggacctttaacaaggaatctatgaatatttaaagagggcaacaaagg |
5569810 |
T |
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| Q |
304 |
tgtctttcacactagttctttcgaagaaacataaacataaattgaaacaagcccaagtgcttgggaagtcgccgtatctaacccgttctaggcgggactc |
403 |
Q |
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| T |
5569809 |
ttcctttcacaccagttctttcaaagaaacaaatacagtaattgaagcaagtccaggttcttgggaagccgtcgtatcgaacccgttctgggggggactc |
5569710 |
T |
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| Q |
404 |
ctctccaactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggatt |
464 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| |||||| |||||||||||| |
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| T |
5569709 |
ctctccaactgctcaatga--attttttattggaatgtgtgaggtattagtaactcggatt |
5569651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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