View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0341_high_2 (Length: 376)
Name: NF0341_high_2
Description: NF0341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0341_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 79 - 352
Target Start/End: Complemental strand, 2650562 - 2650287
Alignment:
| Q |
79 |
gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattat--ggaacgagacaacaaagataggagt |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2650562 |
gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatatggaacgagacaacaaagataggagt |
2650463 |
T |
|
| Q |
177 |
agaagattcattttcttagattttagaatccnnnnnnncttattgtttaacaggttttctttcaatattagttaaccttctagaaatgctagtttctagt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650462 |
agaagattcattttcttagattttagaatcctttttttcttattgtttaacaggttttctttcaatattagttaaccttctagaaatgctagtttctagt |
2650363 |
T |
|
| Q |
277 |
attgcaatggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcatgctactttttggctaata |
352 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650362 |
attgcaatggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcatgctactttttggctaata |
2650287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 79 - 355
Target Start/End: Original strand, 2503606 - 2503885
Alignment:
| Q |
79 |
gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtag |
178 |
Q |
| |
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|||||||| ||||||||||| ||||||||| || | | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
2503606 |
gtatatacaactcatagtaccgttgagttgtatctctacctaggacaatatgagtttggttgagtttaattatggaacgagacaacaaagataggaatag |
2503705 |
T |
|
| Q |
179 |
aagattcattttcttagattttagaatccnnnnnnncttattgtttaaca-ggttttctttcaatattagttaaccttctagaaatgctagtttctagta |
277 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
2503706 |
aagattcattttcttagattttagaatcctttttgtcttattgtttaagagggttttctttcaatgttaattaaccttcttgaaatgctagtttctagta |
2503805 |
T |
|
| Q |
278 |
ttgc--aatggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcatgctactttttggctaataggt |
355 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |||||| |
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| T |
2503806 |
ttgctagatggtttgactctcttgcatctgttggttaatttaaacttgtttcatattgtgctactttttgactcataggt |
2503885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 7332572 - 7332455
Alignment:
| Q |
90 |
tcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattt |
189 |
Q |
| |
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|||||||||||| ||||||||| | | |||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
7332572 |
tcatagtacagtcgagttgcatctctacttaggacaatatgagttgggttgagtttaactatggaacgagaagacaaagataggagtagaagattcattt |
7332473 |
T |
|
| Q |
190 |
tcttagattttagaatcc |
207 |
Q |
| |
|
|| |||||||| |||||| |
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| T |
7332472 |
tcgtagattttcgaatcc |
7332455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 346
Target Start/End: Original strand, 2494377 - 2494495
Alignment:
| Q |
228 |
aggttttctttcaatattagttaaccttctagaaatgctagtttctagtattgc--aatggtttgactctcttgcatatgttggttaatttaaacttgtt |
325 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| ||||| ||||||||| |||||||||| || | ||||| |
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| T |
2494377 |
aggttttctttcaatattaattaaccttctatcaatggtagtttctagtattgctagatgatttga--ctcttgcatttgttggttaacttgactttgtt |
2494474 |
T |
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| Q |
326 |
tcatatcatgctactttttgg |
346 |
Q |
| |
|
|||||| |||||| ||||||| |
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| T |
2494475 |
tcatatgatgctagtttttgg |
2494495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 2650639 - 2650594
Alignment:
| Q |
2 |
gtttttgtgtcttgaatttactcgacaagaataaatttgctgtttc |
47 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
2650639 |
gtttttgtgtcttgcatttactcgacaagaataaattttctgtttc |
2650594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 7340131 - 7340030
Alignment:
| Q |
229 |
ggttttctttcaatattagttaaccttct-agaaatgctagtttctagtattgcaa--tggtttgactctcttgcatatgttggttaatttaaacttgtt |
325 |
Q |
| |
|
|||||||||||||||||| ||||||| | || ||||||||||| |||||||| | || |||||||||||||| | |||||||||| || |||||||| |
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| T |
7340131 |
ggttttctttcaatattaagtaacctttttagcaatgctagttt--agtattgctagatgatttgactctcttgcctctgttggttaacttgaacttgtt |
7340034 |
T |
|
| Q |
326 |
tcat |
329 |
Q |
| |
|
|||| |
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|
| T |
7340033 |
tcat |
7340030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 2632248 - 2632331
Alignment:
| Q |
253 |
cttctagaaatgctagtttctagtattgca--atggtttgactctcttgcatatgttggttaatttaaacttgtttcatatcat |
334 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| ||||||| |||||||| | |||||| ||| |||||| ||||||||| |
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| T |
2632248 |
cttctagaaatgctagtttctagaattgcaagatgatttgactttcttgcatctattggttggtttgaacttgaatcatatcat |
2632331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 2483978 - 2484060
Alignment:
| Q |
79 |
gtatatacgactcatagtacagttgagttgcatgtttgcttaggacaatatgagtttggttgggtttaattatggaacgagac |
161 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| | ||||||| |||| |||||| |||||||||||| || ||||||||| |
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| T |
2483978 |
gtatatatggctcatagtacatgtgagttgcatctccacttaggataataagagtttcgttgggtttaatcatcgaacgagac |
2484060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 335
Target Start/End: Original strand, 2484123 - 2484231
Alignment:
| Q |
228 |
aggttttctttcaatattagttaacc-ttctagaaatgctagtttctagtattgc--aatggtttgactctcttgcatatgttggttaatttaaacttgt |
324 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||||| ||||||||| ||| ||||||| |||||| | |||||||| | | ||||||| |
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| T |
2484123 |
aggttttctttcaatattaagtaacctttctagcaatgctagtt--tagtattgctagatgatttgactgtcttgcctctgttggtttactggaacttgt |
2484220 |
T |
|
| Q |
325 |
ttcatatcatg |
335 |
Q |
| |
|
||||| ||||| |
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|
| T |
2484221 |
ttcatttcatg |
2484231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 20298415 - 20298504
Alignment:
| Q |
117 |
cttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattttcttagattttagaatc |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||| |||||| |||||| | || |||||||||||||||| ||||||||||| |
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| T |
20298415 |
cttaggacaatattagtttggttgggttttattgtggagcgagacccatgagatagaaataaaagattcattttcttaaattttagaatc |
20298504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 20307874 - 20307963
Alignment:
| Q |
117 |
cttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattttcttagattttagaatc |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||| |||||| |||||| | || |||||||||||||||| ||||||||||| |
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| T |
20307874 |
cttaggacaatattagtttggttgggttttattgtggagcgagacccatgagatagaaataaaagattcattttcttaaattttagaatc |
20307963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 20303468 - 20303557
Alignment:
| Q |
117 |
cttaggacaatatgagtttggttgggtttaattatggaacgagacaacaaagataggagtagaagattcattttcttagattttagaatc |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| || | |||||| |||||| | || |||||||||||||||| ||||||||||| |
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|
| T |
20303468 |
cttaggacaatattagtttggttgggttttattgtgcagcgagacccatgagatagaaataaaagattcattttcttaaattttagaatc |
20303557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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