View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0341_high_6 (Length: 247)
Name: NF0341_high_6
Description: NF0341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0341_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 38113296 - 38113470
Alignment:
| Q |
33 |
taattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaatcttctaattctattttctctttttcttctcc |
132 |
Q |
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| T |
38113296 |
taattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaactttctaattctcttttctctttttcttctcc |
38113395 |
T |
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| Q |
133 |
tcaccggccaccacaacaaccggccccacccaccaccgtcgcccaccgtcgccgaccatctttcagatcttgcca |
207 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38113396 |
tcaccggccaccaccacaaccggccccacccaccaccgtcgcccaccgtcgccgaccatctttcagatcttgcca |
38113470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 48291335 - 48291479
Alignment:
| Q |
31 |
attaattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaatcttctaattctattttctctttttcttct |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
48291335 |
attaattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaactttctaattctcttttctctttttctttt |
48291434 |
T |
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| Q |
131 |
cctcaccggccaccacaacaaccggccccacccaccaccgtcgcc |
175 |
Q |
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| T |
48291435 |
cttcaccagccaccaccacaaccggccccacccaccaccgtcgcc |
48291479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 48291469 - 48291501
Alignment:
| Q |
175 |
ccaccgtcgccgaccatctttcagatcttgcca |
207 |
Q |
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| T |
48291469 |
ccaccgtcgccgaccatctttcagatcttgcca |
48291501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 16649848 - 16650008
Alignment:
| Q |
31 |
attaattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaatcttctaattctattttctctttttcttct |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
16649848 |
attaattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaactttctaattctcttttccctttttcttct |
16649947 |
T |
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| Q |
131 |
cctcaccggccaccacaacaaccggccccacccaccaccgtcgcccaccgtcgccgaccatctttcagatcttgcca |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16649948 |
cctcaccggcca----------------cacccaccaccgtcgcccaccgtcgccgaccatctttcagatcttgcca |
16650008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 17624209 - 17624369
Alignment:
| Q |
31 |
attaattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaatcttctaattctattttctctttttcttct |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
17624209 |
attaattaaaaaggagtaattttgttaatcaagaagaaaatgaggggcaattttgtccaacactcatcaactttctaattctcttttccctttttcttct |
17624308 |
T |
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| Q |
131 |
cctcaccggccaccacaacaaccggccccacccaccaccgtcgcccaccgtcgccgaccatctttcagatcttgcca |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17624309 |
cctcaccggcca----------------cacccaccaccgtcgcccaccgtcgccgaccatctttcagatcttgcca |
17624369 |
T |
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