View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0341_low_1 (Length: 418)
Name: NF0341_low_1
Description: NF0341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0341_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 45847996 - 45847615
Alignment:
| Q |
8 |
cagcacagattgacaatgaaacacatgctttttagttataagactcaaggaaagaataagtgcatacttttattgactgagtttggtaaaataacaaaga |
107 |
Q |
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| T |
45847996 |
cagcacacattgacaatgaaacacatgctttttagttataagactcaaggaaagaataagtgcatacttttattgactgaatttggtaaaataagaaaga |
45847897 |
T |
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| Q |
108 |
acaaccgtaattttaataaaaattatatcaataaaattcttaagtctcaccaccaatacgaattaacacttagttgtatttgatttcccatttacaacat |
207 |
Q |
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| T |
45847896 |
acaaccgtaattttaataaaaattatatcaataaaattcttaagtctcaccaccaatacgaattaacacttaattgcgtttgatttcccatttacaacat |
45847797 |
T |
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| Q |
208 |
ataaaagcacgtttacacatttctcgatgtatttttaccgtaattttcaaaaactctaaatactaacttcttcattagcatggttttttactgcgatttc |
307 |
Q |
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| T |
45847796 |
ataaaagcacgtttacacatttctcgatgtatttttaccgtaattttcagaaactctaaatactaacttcttcattagcatggttttttactgcgatttc |
45847697 |
T |
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| Q |
308 |
catcaaacacggttttggagacgctttagcaaagatgcatttagttgagtggtatatctcttgtacacgtgatgtagaaaac |
389 |
Q |
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| T |
45847696 |
catcaaacaaggttttggagacgctttagcaaagatgcatttagttgagtgatatatctcttgtacacgtgatgtagaaaac |
45847615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 5502792 - 5502855
Alignment:
| Q |
234 |
atgtatttttaccgtaattttcaaaaactctaaatactaacttcttcattagcatggtttttta |
297 |
Q |
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| T |
5502792 |
atgtatttttgtcgtgattttcaaaaactctaaatactaacttctacattaacatggtatttta |
5502855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 43292822 - 43292746
Alignment:
| Q |
239 |
tttttaccgtaattttcaaaaactctaaatactaacttcttcattagcatggttttttactgcgatttccatcaaac |
315 |
Q |
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| T |
43292822 |
tttttaccgtgattttcagaagctccaaatactaacttttacgttaacatggttttttaccgtgatttccatcaaac |
43292746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 9607591 - 9607660
Alignment:
| Q |
210 |
aaaagcacgtttacacatttctcgatgtatttttaccgtaattttcaaaaactctaaatactaacttctt |
279 |
Q |
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| T |
9607591 |
aaaagcacgtttgcatgtttctcaacgtgtttttgccgtaatttttagaagctctaaatactaacttctt |
9607660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 27933490 - 27933580
Alignment:
| Q |
188 |
tgatttcccatttacaacatataaaagcacgtttacacatttctcgatgtatttttaccgtaattttcaaaaactctaaatactaacttct |
278 |
Q |
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| T |
27933490 |
tgatttcccgtttgcaacacacaaaagcacgtttacacgttttccgatatatttttaccgtgattttcagaagctctaaatactagcttct |
27933580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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