View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_1D_high_10 (Length: 265)

Name: NF0342_1D_high_10
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_1D_high_10
NF0342_1D_high_10
[»] chr7 (2 HSPs)
chr7 (7-249)||(28385169-28385415)
chr7 (105-247)||(26262047-26262190)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 28385415 - 28385169
Alignment:
Q  7 caaaacacttgcagacaccaaacattattgattccttattctcgcagatccaactcgacttaccgcaaataagattgagatcgacaaacatgtttctgta 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385415 caaaacacttgcagacaccaaacattattgattcctgattctcgcagatccaactcgacttaccgcaaataagattgagatcgacaaacatgtttctgta 28385316  T
Q  107 agtaaaca----ttcaaacaaggttcaggtcgtgtacaaatatacgcaccctctcctgaaagcttctgaccacatgaccagcactaagacgacttacaca 202  Q
    ||||||||    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385315 agtaaacaaacattcaaacaaggttcaggtggtgtacaaatatacacaccctctcctgaaagcttctgaccacatgaccagcactaagacgacttacaca 28385216  T
Q  203 aactacccaatcattccaacagtctgaactagatcgaactgctctca 249  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||    
T  28385215 aactacccaatcattccaacggtctgaactagatcgaactgttctca 28385169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 26262047 - 26262190
Alignment:
Q  105 taagtaaacattcaaacaaggttcaggtcgtgtacaaatatacgcaccctctcctgaaagcttctgaccacatgaccagcactaagacgacttacacaaa 204  Q
    |||| |||||||||||||||||||  ||  | |||||| |||| |||| |||| |||| ||||  ||  |||||||||||||||| | |||||| |||||    
T  26262047 taaggaaacattcaaacaaggttcgagtgttctacaaaaatacacaccatctcttgaaggctttggaggacatgaccagcactaacatgacttaaacaaa 26262146  T
Q  205 -ctacccaatcattccaacagtctgaactagatcgaactgctct 247  Q
     |||||||| ||| || |||||| |||||||||| |||||||||    
T  26262147 actacccaaccatccccacagtccgaactagatcaaactgctct 26262190  T

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