View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_1D_high_5 (Length: 361)
Name: NF0342_1D_high_5
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 126 - 338
Target Start/End: Original strand, 260085 - 260297
Alignment:
| Q |
126 |
gcaaataataataaggtaaccgttccataaaatgaaaaaaggaaattctacttccatttattcattttgggtgtgatacatatacgtaaaaagttgttca |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
260085 |
gcaaataataataaggtaaccactccataaaatgaaaaaaggacattctacttccatttattcattttgggcgtgatacatatacgtaaaaagttgttca |
260184 |
T |
|
| Q |
226 |
gcttgccgaattgttacacgaaaaaataaacattcattaaactagggtggttcattaatctctaaagtgtaaccagtccgtgaatgtcattcttcctcat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
260185 |
gcttgccgaattgttacacgaaaaaataaacattcattaaactagggtggttcattaatctctaaagtgtaaccagtctgtgaatgtcattcttcctcat |
260284 |
T |
|
| Q |
326 |
aaagccttatctc |
338 |
Q |
| |
|
||||||||||||| |
|
|
| T |
260285 |
aaagccttatctc |
260297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 259630 - 259499
Alignment:
| Q |
15 |
atcaagacttgaaatccaacggaaggaactcaaatcaaaagaggggcaatttgaagaaagagagaatgtgcttgagtcaaatgagaaggactatgatgaa |
114 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||| |||| ||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
259630 |
atcaagatttgaaatccaatggaaggaactcaaattaaaggaggagcaatatgaagatagagagaaggtgcttgagtcaaatgagaaggactttgatgaa |
259531 |
T |
|
| Q |
115 |
agattgaaggagcaaataataataaggtaacc |
146 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
259530 |
agattgaaggagcaaataataataaagtaacc |
259499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 260000 - 260086
Alignment:
| Q |
3 |
gatgaagcataaatcaagacttgaaatccaa----cggaaggaactcaaatcaaaagaggggcaatttgaagaaagagagaatgtgc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
260000 |
gatgaagcataaatcaagacttgaaatccaaccaacggaaggaactcaaatcaaaagaggggcaatttgaagaaagagagaatgtgc |
260086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2010 times since January 2019
Visitors: 2880