View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_10 (Length: 312)
Name: NF0342_1D_low_10
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 52918631 - 52918931
Alignment:
| Q |
1 |
gcttattttgattaaaaggtcaattgtaaaattaaaagaccgtagcaggccgcaaatcacaattattccctagttttggttgtacttgggcttcacttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52918631 |
gcttattttgattaaaaggtcaattgtaaaattaaaagaccgtagcaggccgcaaatcacaattattccctagttttggttgtacttgggcttcactttg |
52918730 |
T |
|
| Q |
101 |
tgagtttatattatattggtttagtaaaattttgcactgcacaataaataccaggctttatctgaacaataaattactatttaacctccactttttgagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52918731 |
tgagtttatattatattggtttagtaaaattttgcactgcacaataaataccaggctttatctgaacaataaattactatttaacctccactttttgagg |
52918830 |
T |
|
| Q |
201 |
aaatatcttaagaagttcttcggtatattcctcagtaagcctctttgatctatcaagagtagctttcagcctcaatgtccaaatcttcttgccatcttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52918831 |
aaatatcttaagaagttcttcggtatattcctcagtaagactctttgatctatcaagagtagctttcagcctcaatgtccaaatcttcttgccatcttca |
52918930 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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|
| T |
52918931 |
t |
52918931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 35230364 - 35230664
Alignment:
| Q |
1 |
gcttattttgattaaaaggtcaattgtaaaattaaaagaccgtagcaggccgcaaatcacaattattccctagttttggttgtacttgggcttcacttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230364 |
gcttattttgattaaaaggtcaattgtaaaattaaaagactgtagtaggctgcaaatcacaattattccctagttttggttgtacttgggcttcactttg |
35230463 |
T |
|
| Q |
101 |
tgagtttatattatattggtttagtaaaattttgcactgcacaataaataccaggctttatctgaacaataaattactatttaacctccactttttgagg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35230464 |
tgagtttatattatattggtttagtaaaattttgcactgcacaataaataccaggctttatctgaacaatagattactatttaacctccactttttgagg |
35230563 |
T |
|
| Q |
201 |
aaatatcttaagaagttcttcggtatattcctcagtaagcctctttgatctatcaagagtagctttcagcctcaatgtccaaatcttcttgccatcttca |
300 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230564 |
aaatatctgaagaagttcttcagtatattcctcagtaagcctctttgatctatcaagagtagctttcagcctcaatgtccaaatcttcttgccatcttca |
35230663 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
35230664 |
t |
35230664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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