View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_12 (Length: 299)
Name: NF0342_1D_low_12
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_12 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 25064661 - 25064369
Alignment:
| Q |
7 |
gaaggttggggagcaataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaataca |
106 |
Q |
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| T |
25064661 |
gaaggttggggagcaataaagaaggttcttccattgcacagttggggagcaacaatgaggcctaaatttgtgttgtttggttcatcaattgttcaataca |
25064562 |
T |
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| Q |
107 |
gttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactattaataccgtaacgttttattggtt |
206 |
Q |
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| T |
25064561 |
gttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactattaataccgtaacgttttattggtt |
25064462 |
T |
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| Q |
207 |
atgtgcattttcgaaataaaagagtctagtgaccaagatcacacaccaaatgagaaaaaacgagttcgaatctatgttctagaatatcaaaag |
299 |
Q |
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| T |
25064461 |
atgtacattttcgaaataaaagagtctagtgaccaagatcacacaccaaatgaaaaaaaacgagttcgaatctatgttctagaatatcaaaag |
25064369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 25086094 - 25085795
Alignment:
| Q |
7 |
gaaggttggggagcaataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaataca |
106 |
Q |
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| T |
25086094 |
gaaggttggggagcaataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaataca |
25085995 |
T |
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| Q |
107 |
gttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactattaataccgtaacgttttattggtt |
206 |
Q |
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| T |
25085994 |
gttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactatcaataccgtaaagtttaattggtt |
25085895 |
T |
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| Q |
207 |
atgtgcattttcgaaataaaagagtcta-------gtgaccaagatcacacaccaaatgagaaaaaacgagttcgaatctatgttctagaatatcaaaag |
299 |
Q |
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| T |
25085894 |
atgtacattttcgaaataaaagagtctagtgagtagtgaccaagatcacacaccaaataagaaaaaacgagttcgaatctatgttctagaatatcaaaag |
25085795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 25074398 - 25074278
Alignment:
| Q |
56 |
caacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggttggggagctacactttctcacttgtacgctcgtaa |
155 |
Q |
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| T |
25074398 |
caacaatgaggcctaaatttgtgttgtttggttcttcaattgttcaatacagttactatgaaggttggggagctactctttctcacttgtatgctcgcaa |
25074299 |
T |
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| Q |
156 |
ggtattattatttcttcctct |
176 |
Q |
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| T |
25074298 |
ggtattattatttcttcctct |
25074278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 25091925 - 25091829
Alignment:
| Q |
63 |
gaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggta |
159 |
Q |
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| T |
25091925 |
gaggcctaaatttgtgttgtttggttcttcaattgttcaacacagttactatcaaggttggggagctactcttactcacttgtatgctcgtaaggta |
25091829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 25060891 - 25060775
Alignment:
| Q |
63 |
gaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttacta---tgaaggttggggagctacactttctcacttgtacgctcgtaaggta |
159 |
Q |
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| T |
25060891 |
gaggcctaaatttgtgttgtttggttcttccattgttcaatacaatcattatggtgaaggttggggagctactcttgctcatttgtacggtcgtaaggta |
25060792 |
T |
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| Q |
160 |
ttattatttcttcctct |
176 |
Q |
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| T |
25060791 |
ctctaattccttcctct |
25060775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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