View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_1D_low_15 (Length: 284)

Name: NF0342_1D_low_15
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_1D_low_15
NF0342_1D_low_15
[»] chr1 (3 HSPs)
chr1 (22-264)||(44128266-44128508)
chr1 (22-264)||(44132471-44132713)
chr1 (22-264)||(44140893-44141135)
[»] chr5 (8 HSPs)
chr5 (22-112)||(1504452-1504542)
chr5 (159-264)||(1504807-1504911)
chr5 (22-106)||(1491688-1491772)
chr5 (22-107)||(1477687-1477772)
chr5 (22-111)||(1481798-1481887)
chr5 (215-254)||(1482078-1482117)
chr5 (22-107)||(1485534-1485621)
chr5 (215-254)||(1477884-1477923)
[»] chr7 (11 HSPs)
chr7 (26-107)||(5290081-5290162)
chr7 (26-107)||(5302153-5302234)
chr7 (22-107)||(5309786-5309871)
chr7 (26-107)||(5283965-5284046)
chr7 (22-107)||(5314603-5314688)
chr7 (189-261)||(46707179-46707251)
chr7 (215-264)||(5310282-5310331)
chr7 (215-263)||(5284193-5284241)
chr7 (215-263)||(5314996-5315044)
chr7 (215-263)||(5289886-5289934)
chr7 (215-263)||(5302381-5302429)
[»] chr2 (2 HSPs)
chr2 (22-107)||(24165436-24165521)
chr2 (219-260)||(24163982-24164023)
[»] chr3 (3 HSPs)
chr3 (47-103)||(37863716-37863772)
chr3 (47-103)||(37859726-37859782)
chr3 (47-103)||(39029635-39029691)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 44128266 - 44128508
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctacct 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128266 cacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctacct 44128365  T
Q  122 tagatactttccatttaaatatattttgctatctttacattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcagg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128366 tagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaatatcatcttttcataattcccttcagg 44128465  T
Q  222 tgataaatctatgatcaagaggagatatatgtacctaacagag 264  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44128466 tgataaatctatgatcaagaggagatatatgtacctaacagag 44128508  T

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Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 44132471 - 44132713
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctacct 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132471 cacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctacct 44132570  T
Q  122 tagatactttccatttaaatatattttgctatctttacattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcagg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132571 tagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaatatcatcttttcataattcccttcagg 44132670  T
Q  222 tgataaatctatgatcaagaggagatatatgtacctaacagag 264  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44132671 tgataaatctatgatcaagaggagatatatgtacctaacagag 44132713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 44140893 - 44141135
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctacct 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140893 cacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctacct 44140992  T
Q  122 tagatactttccatttaaatatattttgctatctttacattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcagg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140993 tagatactttccatttaaatatattttgctatctttacattggtttcttaacacccaagttttgttgaactaatatcatcttttcataattcccttcagg 44141092  T
Q  222 tgataaatctatgatcaagaggagatatatgtacctaacagag 264  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44141093 tgataaatctatgatcaagaggagatatatgtacctaacagag 44141135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 1504452 - 1504542
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttc 112  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  1504452 cacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagtgttttttc 1504542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 1504807 - 1504911
Alignment:
Q  159 cattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtaccta 258  Q
    ||||| |||| |||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  1504807 cattgatttcgtatcacccaaattt-gttgaactaatatcatctcttcataattaccttcaggtgataaatctatgattaagagaagatacatgtaccta 1504905  T
Q  259 acagag 264  Q
    ||||||    
T  1504906 acagag 1504911  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 1491688 - 1491772
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 106  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  1491688 cacatatcctgatttttactttaaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 1477687 - 1477772
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||||||| ||||| ||||||||||| ||||| |||||   |||||| ||||| ||||| |||||||||||||||||||    
T  1477687 cacatatcctgatttttacttcaaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtatt 1477772  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 1481798 - 1481887
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatttttt 111  Q
    ||||||||||||||| ||||||||||||||||| ||||| || ||    ||||||||||| ||||| ||||||||||||||||| |||||    
T  1481798 cacatatcctgatttttactttaaaatcacaaacagtgagcataaagtcgaactcaaagaaaaatttcaacgcatgtgtaagtacttttt 1481887  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 1482078 - 1482117
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgta 254  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1482078 cttcaggtgataaatctatgatcaagaggagatacatgta 1482117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 1485534 - 1485621
Alignment:
Q  22 cacatatcctgatttc--tactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||||||||  ||||| | |||| ||||||| || ||||||||  |||||| ||||||||| || ||||| ||||||||||    
T  1485534 cacatatcctgatttctatacttcagaatcgcaaatagcgagcacaagacgcaactcagagagaaatttcagcgcatttgtaagtatt 1485621  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 1477884 - 1477923
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgta 254  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  1477884 cttcaggtgataaatccatgatcaagaggagatacatgta 1477923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 5290162 - 5290081
Alignment:
Q  26 tatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  5290162 tatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtatt 5290081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 5302153 - 5302234
Alignment:
Q  26 tatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  5302153 tatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtatt 5302234  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 5309786 - 5309871
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| || ||||||||||||||||    
T  5309786 cacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtatt 5309871  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 5283965 - 5284046
Alignment:
Q  26 tatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  5283965 tatcctgatttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtatt 5284046  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 5314603 - 5314688
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||   |||||||||||||||||| || ||||||||||||||||    
T  5314603 cacatatcctgatttttactttaaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtatt 5314688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 46707251 - 46707179
Alignment:
Q  189 aactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaaca 261  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46707251 aactaatatcatcctatcataattaccttcaggtgataaatctatgatcaagaggagatacatgtacctaaca 46707179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 5310282 - 5310331
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagag 264  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5310282 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacagag 5310331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 5284193 - 5284241
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 263  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5284193 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacaga 5284241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 5314996 - 5315044
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 263  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5314996 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacaga 5315044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 5289934 - 5289886
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 263  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  5289934 cttcaggtgataaatccatgatcaagaggagatacatgtatctaacaga 5289886  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 5302381 - 5302429
Alignment:
Q  215 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 263  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  5302381 cttcaggtgataaatccatgatcaagaggagatacatgtatctaacaga 5302429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 24165521 - 24165436
Alignment:
Q  22 cacatatcctgatttctactttaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 107  Q
    ||||||||||||||||||||||| | ||||||| || || |||||||   |||||||||| ||||| |||||||| ||||||||||    
T  24165521 cacatatcctgatttctactttagagtcacaaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtatt 24165436  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 24164023 - 24163982
Alignment:
Q  219 aggtgataaatctatgatcaagaggagatatatgtacctaac 260  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  24164023 aggtgataaaactatgatcaagaggagatacatgtacctaac 24163982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 37863772 - 37863716
Alignment:
Q  47 atcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 103  Q
    |||||||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||    
T  37863772 atcacaaacagtgaacacaaaactgaactcagagaaaaattccagcgcatgtgtaag 37863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 37859782 - 37859726
Alignment:
Q  47 atcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 103  Q
    |||||||| |||||||| |||||||| |||||||| ||||| || ||||||||||||    
T  37859782 atcacaaacagtgaacataagactgagctcaaagaaaaatttcagcgcatgtgtaag 37859726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 39029635 - 39029691
Alignment:
Q  47 atcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 103  Q
    |||||||||||||| |||||||| || || ||||| ||||| || ||||||||||||    
T  39029635 atcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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