View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_19 (Length: 257)
Name: NF0342_1D_low_19
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 25802667 - 25802915
Alignment:
| Q |
4 |
gagatgaaaattgcaaatttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatga |
103 |
Q |
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| T |
25802667 |
gagatgaaaattgcaattttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagtatacaactccatctcatga |
25802766 |
T |
|
| Q |
104 |
ttcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaacccta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802767 |
ttcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaacccta |
25802866 |
T |
|
| Q |
204 |
tcaattccggatcctcagccaatgcaccttttacctcaacaaccacggt |
252 |
Q |
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| T |
25802867 |
tcaattccggatcctcagccaatgctccttttacctcaacaaccacggt |
25802915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 23922262 - 23922432
Alignment:
| Q |
21 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
120 |
Q |
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| T |
23922262 |
tttattcatgaaatataaatttatttatttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23922361 |
T |
|
| Q |
121 |
agaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttga |
191 |
Q |
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| T |
23922362 |
agacgtattaacattcttttcacgagctaagctatcttcacacctaccaagtgcatcactagcatatttga |
23922432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 23914625 - 23914758
Alignment:
| Q |
21 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
120 |
Q |
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| T |
23914625 |
tttattcatgaaatataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23914724 |
T |
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| Q |
121 |
agaaatattaacaatcttttcattagctaagcta |
154 |
Q |
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| T |
23914725 |
agacgtattaacattcttttcacgagctaagcta |
23914758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 24435842 - 24435898
Alignment:
| Q |
107 |
agtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcac |
163 |
Q |
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| T |
24435842 |
agtgtagaaagggaagaagtattaacaatcttttcattaactaagctatgttcgcac |
24435898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 35079337 - 35079526
Alignment:
| Q |
51 |
atagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaa |
150 |
Q |
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||||||| ||||| ||||| ||||||||||| | ||||||| |||||||||||||| || ||||||||||||| |||||||||||||||| ||||| || |
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| T |
35079337 |
atagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcttttcgttagccaa |
35079436 |
T |
|
| Q |
151 |
gctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcaccttttacctc |
240 |
Q |
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| T |
35079437 |
gctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcatttccggatcctcgcgcaatgcaccttgtacctc |
35079526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 35074353 - 35074566
Alignment:
| Q |
36 |
taaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaat |
135 |
Q |
| |
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||||||| || ||| ||||||| ||||| |||||||||||||||| | || |||| ||| ||||||||||||| | ||||||||||| |||| ||||| |
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| T |
35074353 |
taaatttattaatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgcaacaatggaagaagtattgacaat |
35074452 |
T |
|
| Q |
136 |
cttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcacctttt |
235 |
Q |
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|||||||| ||| ||||||||||| |||||||| | |||||| | |||||| |||||||||| | ||||| ||||||||||||| ||||||||||| | |
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| T |
35074453 |
cttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcataattgacagccatgcttatcatttccggatcctcacgcaatgcaccttgt |
35074552 |
T |
|
| Q |
236 |
acctcaacaaccac |
249 |
Q |
| |
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||||| | |||||| |
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| T |
35074553 |
acctcgataaccac |
35074566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 13436259 - 13436196
Alignment:
| Q |
92 |
tccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctac |
155 |
Q |
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| T |
13436259 |
tccatctcactattcattgtagaaatggaagaaatattaaaaatcttttcattaactaagctac |
13436196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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