View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_2 (Length: 480)
Name: NF0342_1D_low_2
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 196 - 480
Target Start/End: Original strand, 43586303 - 43586584
Alignment:
| Q |
196 |
tgagaatatgaaaattctaacaaagatatacaacttctattacaagcaaatatcaaatattatcttgacgatttacagtagagattttcctcacaaagac |
295 |
Q |
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| T |
43586303 |
tgagaatatgaaaattctaacaaagatatacaacttctattacaagcaaatatcaaatattatcttgacgatttacagtagagattttcctcacaaagac |
43586402 |
T |
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| Q |
296 |
tctgctgactcatcatcatcatccttttcatatttccattcatgtcctttccactctggtaattgttgaatcacgacctacatcacatggaatgaaaatg |
395 |
Q |
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| T |
43586403 |
tctgctgactcat---catcatccttttcatatttccattcatgtcctttccactctggtaattgttgaatcacgacctacatcacatggaatgaaaatg |
43586499 |
T |
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| Q |
396 |
caacgatatattgctcaatataaagtaagcataaataataaatacagccattttattaatttatttctaatctgtatattaaccc |
480 |
Q |
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| T |
43586500 |
taacgatatattgctcaatataaagtaagcataaataataaatacagccattttattaatttatttataatctgtatattaaccc |
43586584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 43586091 - 43586236
Alignment:
| Q |
10 |
ggtgttcatgtatgtgtctgtgcttcatagaaaaggacccttttctataatttacaaatcaatcaatgaaatcattcaatatttcttctatctatgtaat |
109 |
Q |
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| T |
43586091 |
ggtgtccatgtatgtgtctgtgcttcatagaaaatgacccttttctatcatttacaaatcaatcaatgaaatcattcaatatttcttctatc----taat |
43586186 |
T |
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| Q |
110 |
atgtaatatttcctgtagataaattttgagaaagtgtgaaaacataaaag |
159 |
Q |
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| T |
43586187 |
atgtactattttctgtagataaattttgagaaagtgtgaaaacataaaag |
43586236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 43586239 - 43586278
Alignment:
| Q |
147 |
gaaaacataaaagagaaagaaatgtgataaacaatgttac |
186 |
Q |
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| T |
43586239 |
gaaaacataaaagagaaagaaatgtgataaacaatgttac |
43586278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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