View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_20 (Length: 245)
Name: NF0342_1D_low_20
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_20 |
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| [»] scaffold1202 (1 HSPs) |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6714877 - 6715106
Alignment:
| Q |
1 |
tttcttaatgcatcatatcataattaggattctagtgattattggtgatgtgtatgttcaataacataactttgacatacaatattgatgtgtagaaatg |
100 |
Q |
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| T |
6714877 |
tttcttaatgcatcatatcataattaggattctagtgattattggtgatgtgtatgctcagtaatataactttgacatacaatattgatgtgtagaaatg |
6714976 |
T |
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| Q |
101 |
gtaacacgtgcatttaggtgatatgaataaattgtataatgcatatgaatgttgatgtgattaactggtgtgcgttgtgaatgatgtgtgaatggtgatg |
200 |
Q |
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| T |
6714977 |
gtatcacgtgcatttaggtgataagaataaattgtataatgcatatgaatgttgatgtgattaactggtgtgtgttgtgaatgatgtgtgaatggtgatg |
6715076 |
T |
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| Q |
201 |
tcaaaaattgatgagagttgtgaatgatgt |
230 |
Q |
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| T |
6715077 |
tcaaaaattgatgagagttgtgaatgatgt |
6715106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 11776622 - 11776676
Alignment:
| Q |
50 |
gtgtatgttcaataacataactttgacatacaat-attgatgtgtagaaatggta |
103 |
Q |
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| T |
11776622 |
gtgtatgttcagtaatataactttgacatacaataaatgatgagtagaaatggta |
11776676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1202 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1202
Description:
Target: scaffold1202; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1017 - 826
Alignment:
| Q |
1 |
tttcttaatgcatcatatcataattaggattctagtgattattg--gtgatgtgtatgttcaataacataactttgacatacaatattgatgtgtagaaa |
98 |
Q |
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| T |
1017 |
tttcttcatgcatcatattatgattaggattctggtgacgattctagtgacgtgtatgttcagtaacataactctgacatataatattggtgagtagaaa |
918 |
T |
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| Q |
99 |
tggtaacacgtgcatttaggtgatatgaataaattgtataatgcatatgaatgttgatgtgattaactggtgtgcgttgtgaatgatgtgtg |
190 |
Q |
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| T |
917 |
tggtaccacatgcatgtaggtgacaggggtgtcttgcataatgcatataaatgttgatgtgaataactgatattcattgtgtatgatgtgtg |
826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6977 - 7186
Alignment:
| Q |
1 |
tttcttaatgcatcatatcataattaggattctagtgattat--tggtgatgtgtatgttcaataacataactttgacatacaatattgatgtgtagaaa |
98 |
Q |
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| T |
6977 |
tttcttcatacatcatatcatgattatgattctggtgacaattatggtgacatgtatcttcagtaacataactctgacatataatattggtgagtaaaaa |
7076 |
T |
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| Q |
99 |
tggtaacacgtgcatttaggtgatatgaataaattgtataatgcatatgaatgttgatgtgattaactggtgtgcgttgtgaatga--tgtgtgaatggt |
196 |
Q |
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| T |
7077 |
tggtaccatatgcatgtaggtgataagggtgtcttgcataatgcatataaatgttgatgtgaataactgatattcattgtgtatgatgtgtgtgaatggt |
7176 |
T |
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| Q |
197 |
gatgtcaaaa |
206 |
Q |
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||||| |||| |
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| T |
7177 |
gatgttaaaa |
7186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 24562969 - 24562879
Alignment:
| Q |
8 |
atgcatcatatcataattaggattctagtgattatt--ggtgatgtgtatgttcaataacataactttgacatacaatattgatgtgtaga |
96 |
Q |
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|||||||||||||| |||| |||||| |||| ||| ||||| ||||||||||| ||||||||| |||||||||||| ||| || ||||| |
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| T |
24562969 |
atgcatcatatcatgattaagattctggtgacgattctggtgacgtgtatgttcactaacataacattgacatacaattttgttgagtaga |
24562879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 24604003 - 24603913
Alignment:
| Q |
8 |
atgcatcatatcataattaggattctagtgattatt--ggtgatgtgtatgttcaataacataactttgacatacaatattgatgtgtaga |
96 |
Q |
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|||||||||||||| |||| |||||| |||| ||| ||||| ||||||||||| ||||||||| |||||||||||| ||| || ||||| |
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| T |
24604003 |
atgcatcatatcatgattaagattctggtgacgattctggtgacgtgtatgttcactaacataacattgacatacaattttgttgagtaga |
24603913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 17458037 - 17457940
Alignment:
| Q |
1 |
tttcttaatgcatcatatcataattaggattctagtgattattgg--tgatgtgtatgttcaataacataactttgacatacaatattgatgtgtaga |
96 |
Q |
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|||||| |||||||||||||| ||||||||||| || | ||| ||| ||||||||||| |||||||||| ||||||||||| |||||| ||||| |
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| T |
17458037 |
tttcttcatgcatcatatcatgattaggattctggtaacgattctaatgacgtgtatgttcagtaacataactctgacatacaattttgatgagtaga |
17457940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 22696331 - 22696208
Alignment:
| Q |
3 |
tcttaatgcatcatatcataattaggattctagtgattattgg--tgatgtgtatgttcaataacataactttgacatacaatattgatgtgtagaaatg |
100 |
Q |
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|||| |||||||||| | ||||| ||||||||||||| ||| ||||||||||| ||| |||||||| |||||||||| ||| || ||||||| |
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| T |
22696331 |
tcttcatgcatcataacttaatttggattctagtgatgattctaatgatgtgtatgctcagtaacataataatgacatacaaatttggtgagtagaaaca |
22696232 |
T |
|
| Q |
101 |
gtaacacgtgcatttaggtgatat |
124 |
Q |
| |
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||| ||| ||||| |||||||||| |
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|
| T |
22696231 |
gtaccacatgcatataggtgatat |
22696208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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