View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_24 (Length: 231)
Name: NF0342_1D_low_24
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_24 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 41570378 - 41570171
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccacgt |
122 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41570378 |
ttccttaccaagtccaggcgtatccaaacgaagaaggagagaatcctttgtctctc--gcatcccagccgcgtcgaactccacttgctccgattccacgt |
41570281 |
T |
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| Q |
123 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatct-aacaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
41570280 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaggacatggttcaagctcctagtagaagaaaacggatcgaacacatctaaaaaat |
41570181 |
T |
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| Q |
222 |
aaaacaggaa |
231 |
Q |
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|||||||||| |
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| T |
41570180 |
aaaacaggaa |
41570171 |
T |
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Target: scaffold0361 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 8999 - 9193
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccacgt |
122 |
Q |
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||||||||||||||||||||||||||||||||| || ||| |||||| ||||||| |||||||||| || ||||||||||||||| |||| ||||||||| |
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| T |
8999 |
ttccttaccaagtccaggcatatccaaacgaaggagcagacaatcctctgtctctttcgcatcccaaccacgtcgaactccactgtctccaattccacgt |
9098 |
T |
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| Q |
123 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
217 |
Q |
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| T |
9099 |
gaagcagaaaggaatggattgtccattaattgatccaccatgttaagcacctggctcaaactcctagttggagaaaacggatcaaacacatctaa |
9193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 246890 - 246696
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccacgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||| ||| || || |||||| |
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| T |
246890 |
ttccttaccaagtccaggcatatccaaacgaagaagcagagaatcctctgtctctttcgcatcccagccgcgtcgagctccaccggcaccaatcccacgt |
246791 |
T |
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| Q |
123 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
217 |
Q |
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|||||||||||||| ||||||| || | |||||||||||||| | || ||| ||| |||||| | | |||||||||||| ||||| ||||| |
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| T |
246790 |
gaagcagagaggaatggattgtccatcaactgatccaccatgttcagcacctggctcagactcctacttggagaaaacggatcaaacacgtctaa |
246696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 98539 - 98394
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccacgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||| || ||||||||||||| || ||| |||||| | |
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| T |
98539 |
ttccttaccaagtccaggcatatccaaacgaagaagcagagaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccatgg |
98440 |
T |
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| Q |
123 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaa |
168 |
Q |
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| T |
98439 |
gaagcagaaaggaatggattgtccattaattgatccaccatgttaa |
98394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 16359567 - 16359374
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccacgt |
122 |
Q |
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|||| |||||||||||| ||||||||||||||| || | |||||||| ||||||| |||||||||| || |||| | |||||| | |||| ||||||||| |
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| T |
16359567 |
ttccataccaagtccagtcatatccaaacgaaggagcatagaatcctctgtctctttcgcatcccaaccacgtcaagctccaccgtctccaattccacgt |
16359468 |
T |
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| Q |
123 |
gaagcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
217 |
Q |
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| T |
16359467 |
gaagcagaaaggactggattgtccattaattgattcaccatgttaagcac-tggcttaaacttctagttggagaaaacggattaaacacatctaa |
16359374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 36237118 - 36237215
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||| || ||||||||||||| || ||| ||||||| |
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| T |
36237118 |
ttccttaccaagtccaggcatatccaaacgaagaagcagaaaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccac |
36237215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 31231375 - 31231278
Alignment:
| Q |
23 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||| || ||||||||||||| || ||| ||||||| |
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| T |
31231375 |
ttccttaccaagtccaggcatatccaaacgaagaagcagagaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccac |
31231278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 19769528 - 19769426
Alignment:
| Q |
26 |
cttaccaagtccaggcatatccaaacgaagaaggagagaatcctttgtctctctcgcatcccagccgcgtcgaactccactggctccgattccacgtgaa |
125 |
Q |
| |
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||||||| ||||||| |||||||| |||| ||| | |||| ||| ||||||| |||||||||| || ||||||||||||| | |||| |||||||||||| |
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| T |
19769528 |
cttaccaggtccaggtatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa |
19769429 |
T |
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| Q |
126 |
gca |
128 |
Q |
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||| |
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|
| T |
19769428 |
gca |
19769426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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