View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_25 (Length: 227)
Name: NF0342_1D_low_25
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 835010 - 834813
Alignment:
| Q |
1 |
aaaagtgtgctaattttggcattagttcttagtttagcatgataacaacaatatacaaataagtgcactaagaaggtgcaacaaacatggttacaaatat |
100 |
Q |
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| T |
835010 |
aaaagtgtgctaattttggcattagttcttagtttagcatgataacaacaatatacaaaaaggtgcactaagaaggtgcaacaaacatggttacaaatat |
834911 |
T |
|
| Q |
101 |
gaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagctt |
200 |
Q |
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| T |
834910 |
gaaataatgataaacaa---aatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagctt |
834814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 813302 - 813137
Alignment:
| Q |
1 |
aaaagtgtgctaattttggcattagttcttagtttagcatgataacaacaatatacaaataagtgcactaagaaggtgcaacaaacatggttacaaatat |
100 |
Q |
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|||||| |||||||||| | ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
813302 |
aaaagtatgctaattttagtattagttctgagtttagcatgataacaacaatatat------------tgagaaggtgcaacaaacatgagtacaaatat |
813215 |
T |
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| Q |
101 |
gaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaattgaagaataaa |
181 |
Q |
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||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | |||||||||||||||||||||| |
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| T |
813214 |
gaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaattgaagaataaa |
813137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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