View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_1D_low_26 (Length: 221)

Name: NF0342_1D_low_26
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_1D_low_26
NF0342_1D_low_26
[»] chr5 (8 HSPs)
chr5 (23-221)||(38816741-38816932)
chr5 (158-221)||(19820440-19820503)
chr5 (158-221)||(22013364-22013427)
chr5 (158-221)||(42469171-42469234)
chr5 (183-221)||(15410494-15410532)
chr5 (180-221)||(21522722-21522763)
chr5 (180-221)||(21533288-21533329)
chr5 (173-221)||(15382442-15382490)
[»] chr7 (3 HSPs)
chr7 (158-221)||(27944991-27945054)
chr7 (158-221)||(24105629-24105691)
chr7 (180-218)||(11722147-11722185)
[»] chr2 (7 HSPs)
chr2 (158-221)||(33519736-33519799)
chr2 (158-221)||(20539720-20539783)
chr2 (158-221)||(19536444-19536507)
chr2 (158-221)||(21782864-21782927)
chr2 (159-221)||(21624217-21624279)
chr2 (157-221)||(23717976-23718039)
chr2 (157-221)||(24105648-24105711)
[»] chr6 (12 HSPs)
chr6 (173-221)||(9027143-9027191)
chr6 (158-221)||(853905-853968)
chr6 (158-221)||(8365565-8365628)
chr6 (160-221)||(12696277-12696337)
chr6 (173-221)||(5000672-5000720)
chr6 (158-221)||(3398569-3398632)
chr6 (183-221)||(9658854-9658892)
chr6 (180-221)||(10294079-10294120)
chr6 (173-221)||(7938081-7938129)
chr6 (173-221)||(7977876-7977924)
chr6 (173-221)||(9107416-9107464)
chr6 (173-221)||(16766662-16766710)
[»] chr8 (5 HSPs)
chr8 (158-221)||(25192393-25192456)
chr8 (158-221)||(126395-126457)
chr8 (175-221)||(29510350-29510396)
chr8 (180-221)||(22651948-22651989)
chr8 (180-221)||(27213519-27213560)
[»] chr1 (8 HSPs)
chr1 (173-221)||(40917716-40917764)
chr1 (174-221)||(398811-398858)
chr1 (157-221)||(5376546-5376609)
chr1 (181-221)||(6427323-6427363)
chr1 (158-212)||(39130822-39130876)
chr1 (171-221)||(48040508-48040558)
chr1 (181-221)||(2896167-2896207)
chr1 (158-218)||(34315663-34315722)
[»] scaffold0223 (1 HSPs)
scaffold0223 (158-221)||(20122-20185)
[»] chr3 (6 HSPs)
chr3 (158-221)||(8842280-8842343)
chr3 (158-221)||(8383207-8383270)
chr3 (167-221)||(10335332-10335386)
chr3 (159-212)||(8587076-8587129)
chr3 (173-221)||(24205087-24205135)
chr3 (173-221)||(28917966-28918014)
[»] scaffold0306 (1 HSPs)
scaffold0306 (157-221)||(13349-13413)
[»] scaffold0152 (1 HSPs)
scaffold0152 (157-221)||(21914-21978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (173-221)||(8763-8811)
[»] scaffold0003 (1 HSPs)
scaffold0003 (173-221)||(241559-241607)
[»] scaffold0018 (1 HSPs)
scaffold0018 (161-221)||(178865-178925)
[»] scaffold0007 (1 HSPs)
scaffold0007 (173-221)||(225314-225362)
[»] chr4 (1 HSPs)
chr4 (173-221)||(23293032-23293080)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 38816932 - 38816741
Alignment:
Q  23 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  123 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactcc-------gcacggatactgacacgccgacaccgctaataa 38816741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 19820503 - 19820440
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataa 19820440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 22013364 - 22013427
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataa 22013427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 42469171 - 42469234
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| | |||||| ||| ||||| |||||||| |||||||||||||| | ||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataa 42469234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 15410532 - 15410494
Alignment:
Q  183 gacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataa 15410494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 21522722 - 21522763
Alignment:
Q  180 ccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  21522722 ccggacacgacacggacactgacacgccgacacagctaataa 21522763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 21533288 - 21533329
Alignment:
Q  180 ccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  21533288 ccggacacgacacggacactgacacgccgacacagctaataa 21533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15382442 - 15382490
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| | |||||||||||||| ||||||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataa 15382490  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 27944991 - 27945054
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| |||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataa 27945054  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 24105629 - 24105691
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| ||||||| | |||||||| |||||| |||||||||||||||| ||||||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataa 24105691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 11722185 - 11722147
Alignment:
Q  180 ccggacacggcacggatactgacacgccgacaccgctaa 218  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaa 11722147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 33519736 - 33519799
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| ||||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataa 33519799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 20539783 - 20539720
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| | ||||||| |||||| ||||||||| |||||| ||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataa 20539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 19536507 - 19536444
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||  |||||||| ||||||||| |||||| | ||||||||||||||  |||||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataa 19536444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 21782927 - 21782864
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||||||||||| ||| | ||||||| |||  | |||||||||||||||| ||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataa 21782864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 21624217 - 21624279
Alignment:
Q  159 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||| || |||||||| ||| ||||| ||| || |||||||||||||||| ||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataa 21624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 23717976 - 23718039
Alignment:
Q  157 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| ||||||||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataa 23718039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 24105648 - 24105711
Alignment:
Q  157 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| ||||||||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataa 24105711  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 9027143 - 9027191
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataa 9027191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 853968 - 853905
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||  |||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataa 853905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 8365628 - 8365565
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||||||  |||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataa 8365565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 12696277 - 12696337
Alignment:
Q  160 atgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||| |||||||| | ||||||| |||||| |||||||||||||||| ||||||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataa 12696337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 5000720 - 5000672
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||| | |||||||||||||||| |||||||||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataa 5000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 3398569 - 3398632
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||| | ||||||||  || ||||| |||||| |||||||||||||||| ||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataa 3398632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 9658854 - 9658892
Alignment:
Q  183 gacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataa 9658892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 10294079 - 10294120
Alignment:
Q  180 ccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||| |||||||||||||| ||||| |||||||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataa 10294120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7938081 - 7938129
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| || ||| |||||||||||||||| ||||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataa 7938129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 7977924 - 7977876
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| | ||||||| || |||||||||||||||||||| ||||||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataa 7977876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 9107464 - 9107416
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| ||| |||||||||||| ||||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataa 9107416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 16766662 - 16766710
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| || ||| |||||||||||||||| ||||||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataa 16766710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 25192456 - 25192393
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| ||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataa 25192393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 126457 - 126395
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| ||||| || | |||||||  ||||||||||||||||| |||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataa 126395  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 29510396 - 29510350
Alignment:
Q  175 ggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||| ||||||||| |||||| |||||||||||||||| ||||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataa 29510350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 22651948 - 22651989
Alignment:
Q  180 ccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataa 22651989  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 27213519 - 27213560
Alignment:
Q  180 ccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataa 27213560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 40917716 - 40917764
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataa 40917764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 398858 - 398811
Alignment:
Q  174 cggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataa 398811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 5376609 - 5376546
Alignment:
Q  157 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||| ||||| |||| || |||||||||| |||||| ||| |||||||||||||||||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataa 5376546  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 6427323 - 6427363
Alignment:
Q  181 cggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataa 6427363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 39130876 - 39130822
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacac 212  Q
    |||||||||||| |||||||| ||||||||| || ||||| |||||||| |||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacac 39130822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 48040558 - 48040508
Alignment:
Q  171 atacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | ||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataa 48040508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 2896207 - 2896167
Alignment:
Q  181 cggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||  |||||| |||||||||||||||||||||||||    
T  2896207 cggacacaacacggacactgacacgccgacaccgctaataa 2896167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 34315663 - 34315722
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaa 218  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| |||||||| |||||    
T  34315663 ctatgaagcacggatacgga-tatggacacgacacggatactgacatgccgacacagctaa 34315722  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 20122 - 20185
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||  |||||||| ||||||||| |||||| | |||||||||||||| ||||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataa 20185  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 8842280 - 8842343
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||||||||| |||||||| ||||| ||| |||||| | ||||| |||||||||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataa 8842343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 8383207 - 8383270
Alignment:
Q  158 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||| |||||| | |||||| | ||||||| |||||| | |||||||||||||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataa 8383270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 10335386 - 10335332
Alignment:
Q  167 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||  |||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataa 10335332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 8587129 - 8587076
Alignment:
Q  159 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacac 212  Q
    ||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacac 8587076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 24205135 - 24205087
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| |||||||||||||||| | ||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataa 24205087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 28917966 - 28918014
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| |||||||||||||||  ||||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataa 28918014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 13349 - 13413
Alignment:
Q  157 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataa 13413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 21978 - 21914
Alignment:
Q  157 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataa 21914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 8763 - 8811
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataa 8811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 241559 - 241607
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataa 241607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 178925 - 178865
Alignment:
Q  161 tgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    ||||||||| |||  ||| ||||||||| |||||| ||||||||||||||||  |||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataa 178865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 225362 - 225314
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| |||||||||||||||| | ||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataa 225314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 23293080 - 23293032
Alignment:
Q  173 acggactccggacacggcacggatactgacacgccgacaccgctaataa 221  Q
    |||||| ||||||||| |||||| | |||||||||||||| ||||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataa 23293032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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