View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_29 (Length: 209)
Name: NF0342_1D_low_29
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_29 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 31265139 - 31264952
Alignment:
| Q |
1 |
gtaggagaaaaaagagtgatagagataaactaaaaactgaagattaaatggtgacaaatttgtaaaatagttgaaaaatgcactttttatctggttaatt |
100 |
Q |
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| T |
31265139 |
gtaggagaaaaaagagtgatagagacaaactaaaaactgaagattaaatggtgacaaatttgtaaaatagttgaaaaatgcactttttatctagttaatt |
31265040 |
T |
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| Q |
101 |
ttattagagcatgccaaagatttaaaatatttcacatcaaactcatgctcatgagtcaagattctcacgatttcctgaattgtatatt |
188 |
Q |
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| T |
31265039 |
ttattagagcatgccaaagatttaaaatattccacatcaaactcatgctcatgagtcaagattctcacgatttcctgaattgtatatt |
31264952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 22048710 - 22048767
Alignment:
| Q |
115 |
caaagatttaaaatatttcacatcaaactcatgctcatgagtcaagattctcacgatt |
172 |
Q |
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| T |
22048710 |
caaagatttacattattccacatcaaactcatgctaatgagtcaagattctcatgatt |
22048767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 44359095 - 44359152
Alignment:
| Q |
115 |
caaagatttaaaatatttcacatcaaactcatgctcatgagtcaagattctcacgatt |
172 |
Q |
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| T |
44359095 |
caaagatttacattattccacatcaaactcatgctaatgagtcaagattctcatgatt |
44359152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 80044 - 79988
Alignment:
| Q |
116 |
aaagatttaaaatatttcacatcaaactcatgctcatgagtcaagattctcacgatt |
172 |
Q |
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| T |
80044 |
aaagatttacattattccacatcaaactcatgctaatgagtcaagattctcatgatt |
79988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 13813863 - 13813921
Alignment:
| Q |
114 |
ccaaagatttaaaatatttcacatcaaactcatgctcatgagtcaagattctcacgatt |
172 |
Q |
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||||||||||| | |||| ||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
13813863 |
ccaaagatttacattattccacatcaaactcatgctaatgggtcaagattctcatgatt |
13813921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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