View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_30 (Length: 208)
Name: NF0342_1D_low_30
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 47705315 - 47705510
Alignment:
| Q |
7 |
agtttaaagtacttaagnnnnnnnggaagatattcatacactagtacttctttatcttttcctttccattgatctagtaatgtctttctaatcataccat |
106 |
Q |
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| T |
47705315 |
agtttaaagtacttaagtttttttggaagatattcatacactagtacttctttatcttttcctttccattgatctagtaatgtctttctaatcataccat |
47705414 |
T |
|
| Q |
107 |
gttcccctccagcaaagaaagcaagtatagaacgattatttgggtctttgcttggaattggtgagctcaacttgtaaccttgtaggttcatttcag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47705415 |
gttcccctccagcaaagaaagcaagtatagaacgattatttgattctttgcttggaattggtgagctcaacttgtaaccttgtaggttcatttcag |
47705510 |
T |
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