View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_1D_low_5 (Length: 416)

Name: NF0342_1D_low_5
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_1D_low_5
NF0342_1D_low_5
[»] chr5 (2 HSPs)
chr5 (57-398)||(38815437-38815781)
chr5 (1-61)||(38815928-38815988)
[»] chr7 (2 HSPs)
chr7 (96-193)||(39079876-39079973)
chr7 (88-145)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (96-193)||(19810946-19811043)
[»] chr8 (1 HSPs)
chr8 (139-193)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (98-144)||(2115530-2115576)
chr6 (138-191)||(18286713-18286766)
[»] chr2 (2 HSPs)
chr2 (114-160)||(33455859-33455905)
chr2 (105-150)||(7252252-7252297)
[»] chr3 (1 HSPs)
chr3 (105-150)||(1348868-1348913)
[»] scaffold1034 (1 HSPs)
scaffold1034 (96-171)||(819-895)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 57 - 398
Target Start/End: Complemental strand, 38815781 - 38815437
Alignment:
Q  57 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815781 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 38815682  T
Q  157 tatcctagatctgttgttggactgcccgcattgtccatgcccctagcccaatttatgccaggttgtgaggca--gtgttggaaattttgccttgattgtg 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38815681 tatcctagatctgttgttggactgcccgcattgtccatgcccctagtccaatttatgccaggttgtgaggcagggtgttggaaattttgccttgattgtg 38815582  T
Q  255 gtctgcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 354  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815581 gtcttcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 38815482  T
Q  355 cagcctagagatctaaatagccgtgaagggcctc-ttgtgtggtg 398  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  38815481 cagcctagagatctaaatagccgtgaagggcctctttgtgtggtg 38815437  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38815988 - 38815928
Alignment:
Q  1 cattgtgttggacttgagaggtcgggtttagtcccgcatgaccaagagacatggcctaagt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815988 cattgtgttggacttgagaggtcgggtttagtcccgcatgaccaagagacatggcctaagt 38815928  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 39079973 - 39079876
Alignment:
Q  96 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 193  Q
    |||||||| ||||||| |||| | |||| | ||||||||| | |||||||  ||| ||| ||||||||||||||| ||||| || || ||||||||||    
T  39079973 acaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagcctatcctagatctgtcgttgggcttcctgcattgtcca 39079876  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 21048749 - 21048692
Alignment:
Q  88 cgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatg 145  Q
    ||||||| ||||||| ||||| || |||||| |||| ||||||||||| |||||||||    
T  21048749 cgcaccttacaagccaattttataaggttgagttaggctcaacccaaattctaagatg 21048692  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 19811043 - 19810946
Alignment:
Q  96 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 193  Q
    |||||||| ||||||| |||||| |||| |  |||||||| | ||||||| |||| ||| |||||||||||||||||  || || ||||||| |||||    
T  19811043 acaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagactatcctagatctgttgcagggcttcccgcatcgtcca 19810946  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 25971173 - 25971227
Alignment:
Q  139 taagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 193  Q
    |||||||  ||| ||| |||||||||||||||||||||||| ||||||| |||||    
T  25971173 taagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtcca 25971227  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 2115530 - 2115576
Alignment:
Q  98 aagccgattttgtagggttgaattagactcaacccaaactctaagat 144  Q
    |||||| |||||||||||| |||||||||||||||||| | ||||||    
T  2115530 aagccggttttgtagggttcaattagactcaacccaaattttaagat 2115576  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 18286713 - 18286766
Alignment:
Q  138 ctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtc 191  Q
    ||||||||||||| ||| ||||| |||||||||||| || || |||||||||||    
T  18286713 ctaagatgatatcagagcctatcgtagatctgttgtcgggcttcccgcattgtc 18286766  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 33455859 - 33455905
Alignment:
Q  114 gttgaattagactcaacccaaactctaagatgatatcggagtctatc 160  Q
    ||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  33455859 gttgagttagactcaacccaaattctaagatggtatcagagtctatc 33455905  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 7252252 - 7252297
Alignment:
Q  105 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 150  Q
    |||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  7252252 ttttgtagggttgagttaggctcaacccaaattctaagatggtatc 7252297  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 1348913 - 1348868
Alignment:
Q  105 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 150  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||    
T  1348913 ttttgtatggttgagttagactcaacccaaattttaagatgatatc 1348868  T

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Target: scaffold1034 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 819 - 895
Alignment:
Q  96 acaagccgattttgta-gggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgtt 171  Q
    |||||| ||||||||| |||||||||||| |  ||| |||| |||||||||||||| ||||||| |  |||||||||    
T  819 acaagctgattttgtaagggttgaattaggcctaactcaaattctaagatgatatcagagtctaactaagatctgtt 895  T

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