View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_1D_low_6 (Length: 398)

Name: NF0342_1D_low_6
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_1D_low_6
NF0342_1D_low_6
[»] chr8 (8 HSPs)
chr8 (123-398)||(38865190-38865465)
chr8 (160-398)||(38827359-38827591)
chr8 (160-395)||(38861762-38861994)
chr8 (185-382)||(38841160-38841354)
chr8 (187-395)||(38850576-38850781)
chr8 (185-395)||(38858879-38859089)
chr8 (160-280)||(38847052-38847169)
chr8 (10-52)||(38865528-38865570)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 123 - 398
Target Start/End: Complemental strand, 38865465 - 38865190
Alignment:
Q  123 caacaactcaatctctagttaaataactatcaactagttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactcgttcatgagc 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38865465 caacaactcaatctctaattaaataactatcaactagttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactcgtccatgagc 38865366  T
Q  223 ttcttgtggaatctcacacaagaaggttactctttcaagacccaattgatcatcaattactaactaactcccctgttttaacaaacaataaccataattc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  38865365 ttcttgtggaatctcacacaagaaggttactctttcaagacccaattgaacatcaatcactaactaactcccatgttttaacaaataataaccataattc 38865266  T
Q  323 aacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctctt 398  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38865265 aacagactcatattttggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctctt 38865190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 160 - 398
Target Start/End: Complemental strand, 38827591 - 38827359
Alignment:
Q  160 ttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactcgttcatgagcttcttgtggaatctcacacaagaaggttactctttca 259  Q
    |||||||||| |||||||||||||||   |||||||| ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| ||    
T  38827591 ttccccaacagaaaacaatgtatgct---tctacttcttttacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttcca 38827495  T
Q  260 agacccaattgatcatcaattactaactaactcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattca 359  Q
    | | ||||||||| |||||| || ||| | |||||||||| | ||| ||   ||||||||||||||  |||||||||| |||  ||||||||| ||| ||    
T  38827494 aaatccaattgattatcaatcaccaaccagctcccctgttctcacacac---aaccataattcaactaactcatattttggaattcgtgaatttgatgca 38827398  T
Q  360 aatgttataatgatacttgcagttttattgtgtgctctt 398  Q
    |||||| | ||||||||||||||| ||||||||||||||    
T  38827397 aatgttgtgatgatacttgcagttctattgtgtgctctt 38827359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 160 - 395
Target Start/End: Complemental strand, 38861994 - 38861762
Alignment:
Q  160 ttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactcgttcatgagcttcttgtggaatctcacacaagaaggttactctttca 259  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||| |||  | ||||| ||||||||||||||||||||||||||||||||| ||||    
T  38861994 ttccccaacaaaaaacaatgtatgct---tctacttcctttacttcaccacttctccatgaacttcttgtggaatctcacacaagaaggttactcattca 38861898  T
Q  260 agacccaattgatcatcaattact---aactaactcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgat 356  Q
    | ||||| |||||||||||| |||   ||  ||||||| | |||| |||   |||| ||| |||||||| |||||||||||  |||||| |||||| |||    
T  38861897 aaacccagttgatcatcaatcacttaaaatcaactcccgtattttcaca---aatagccacaattcaaccgactcatattttagagctcctgaatttgat 38861801  T
Q  357 tcaaatgttataatgatacttgcagttttattgtgtgct 395  Q
    ||||||||| | ||||||||||||||| |||| ||||||    
T  38861800 tcaaatgttgtgatgatacttgcagttgtattatgtgct 38861762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 185 - 382
Target Start/End: Complemental strand, 38841354 - 38841160
Alignment:
Q  185 tgcttctacttcctttacttcacaactcgttcatgagcttcttgtggaatctcacacaagaaggttactctttcaagacccaattgatcatcaattacta 284  Q
    |||||||| |||||||||| ||||| |  |  |||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||    
T  38841354 tgcttctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacataagaaggttactcattcaaaacccagttgatcatcaatcacta 38841255  T
Q  285 actaactcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagt 382  Q
    || |||||||||  ||||||||||   ||||||||||||||||||||| |||| |||| ||||||||| |||||||| ||| | ||||||||||||||    
T  38841254 accaactcccctactttaacaaac---aaccataattcaacagactcaaattttggagatcgtgaatttgattcaaaagttgtgatgatacttgcagt 38841160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 187 - 395
Target Start/End: Original strand, 38850576 - 38850781
Alignment:
Q  187 cttctacttcctttacttcacaactcgttcatgagcttcttgtggaatctcacacaagaaggttactctttcaagacccaattgatcatcaattactaac 286  Q
    ||||||||||||| |||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| ||| | |||||||||  ||||| || |||    
T  38850576 cttctacttccttaacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattttcaatcaccaac 38850675  T
Q  287 taactcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcagtttta 386  Q
     | ||||||||| ||||||||||||   || ||||||||||||||| |||| |||||||||||||| |||||||||||| | |||||| |||||||  ||    
T  38850676 cagctcccctgtgttaacaaacaat---cacaattcaacagactcaaattttggagctcgtgaatttgattcaaatgttgtgatgatagttgcagtccta 38850772  T
Q  387 ttgtgtgct 395  Q
    || ||||||    
T  38850773 ttatgtgct 38850781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 185 - 395
Target Start/End: Complemental strand, 38859089 - 38858879
Alignment:
Q  185 tgcttctacttcctttacttcacaactcgttcatgagcttcttgtggaatctcacacaagaaggttactctttcaagacccaattgatcatcaattact- 283  Q
    |||||||||||| |||||||||| |||  | ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||     
T  38859089 tgcttctacttcttttacttcaccacttctacatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcactt 38858990  T
Q  284 --aactaactcccctgttttaacaaacaataaccataattcaacagactcatatttcggagctcgtgaattcgattcaaatgttataatgatacttgcag 381  Q
      ||  ||| |||||||||| || ||||| |||   |||||||| |||||| | ||||||||||||||||| |||||| ||||| | |||||| ||||||    
T  38858989 aaaatcaacccccctgttttcacgaacaacaac---aattcaaccgactcaaagttcggagctcgtgaatttgattcagatgttgtgatgataattgcag 38858893  T
Q  382 ttttattgtgtgct 395  Q
    || |||| ||||||    
T  38858892 ttctattatgtgct 38858879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 38847169 - 38847052
Alignment:
Q  160 ttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactcgttcatgagcttcttgtggaatctcacacaagaaggttactctttca 259  Q
    |||||||||| |||||||||||||||   |||||||| ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| ||    
T  38847169 ttccccaacagaaaacaatgtatgct---tctacttcttttacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttcca 38847073  T
Q  260 agacccaattgatcatcaatt 280  Q
    | ||||| |||||||||||||    
T  38847072 aaacccagttgatcatcaatt 38847052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 38865570 - 38865528
Alignment:
Q  10 ataatactagttaatttgaaactttaaataaaagcaagatacc 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38865570 ataatactagttaatttgaaactttaaataaaagcaagatacc 38865528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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