View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_1D_low_9 (Length: 313)
Name: NF0342_1D_low_9
Description: NF0342_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_1D_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 26137714 - 26138013
Alignment:
| Q |
9 |
gagatgaacatcatatcttaatttggagtatttggtgttttcaatttcataggttgttatattagtaatgtaattttgttaaaaactaatagtaatagtg |
108 |
Q |
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| T |
26137714 |
gagacgaacatcatatcttaatttcgagtatttggtgttttcaatttcataggttgttatattagtaatgtaattttgttaaaaactaacagtaatagtg |
26137813 |
T |
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| Q |
109 |
tgtaattaaaatgaataatccgcgtaaggaaaatgtgaccaactaacaaaagagatgaataattgattagaaggggcaatcaaaggtttccaaccacttg |
208 |
Q |
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| T |
26137814 |
tgtaattaaaatgaataatccgcgtaaggaaaatgtgaccaactaacaaaagagatgaataattgattagaaggagcaatcaaaggtttccaaccacttg |
26137913 |
T |
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| Q |
209 |
gtagaatatgtatgctcccacctaaagtttgaatttatacctttagaacaattattccatag-ttaattgagaaagacgtaaggcaaagcatgatcattg |
307 |
Q |
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| T |
26137914 |
gtagaatatgtatgctcccacctaaagtttgaatttatacctttggaacaattattccatagattaattgagaaagacgtaaggcaaagcatgatcattg |
26138013 |
T |
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