View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_high_30 (Length: 243)
Name: NF0342_2D_high_30
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_high_30 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 41920404 - 41920178
Alignment:
| Q |
17 |
atcttcttccacaaggacactttctgcaatgtatacacattattagcatgagtatattttgtactgtagattgaaaataattcaacgaagcaaccttaaa |
116 |
Q |
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| T |
41920404 |
atcttcttccacaaggacactttctgcaatgcatacacattattagcatgagtatattttgtactgtagattgaaaataattcaacgaagcaacattaaa |
41920305 |
T |
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| Q |
117 |
cttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtac |
216 |
Q |
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| T |
41920304 |
cttaccttgtttctaataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtac |
41920205 |
T |
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| Q |
217 |
tcggcagttcatttttaacctgtattc |
243 |
Q |
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| T |
41920204 |
tcggcagttcatttttaacctgtattc |
41920178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 26831029 - 26831149
Alignment:
| Q |
117 |
cttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtac |
216 |
Q |
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| T |
26831029 |
cttaccttgtttgtgacaatctccattaccatttttctgaaaagattggctggtccacatgaccatcgatgttgttggtacctaaaggcttttaatgtac |
26831128 |
T |
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| Q |
217 |
tcggcagttcatttttaacct |
237 |
Q |
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| T |
26831129 |
ttggcaattcgtttttaacct |
26831149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 26784309 - 26784428
Alignment:
| Q |
118 |
ttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtact |
217 |
Q |
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| T |
26784309 |
ttaccttgtttgtgagaatctccataatcattttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtact |
26784408 |
T |
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| Q |
218 |
cggcagttcatttttaacct |
237 |
Q |
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|||| |||||||||||||| |
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| T |
26784409 |
gggcaattcatttttaacct |
26784428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 26817385 - 26817504
Alignment:
| Q |
118 |
ttaccttgtttctgataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtact |
217 |
Q |
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|||||||| |||| | |||||||| ||||||||| || ||||||||||| ||||| ||||| ||||| |||||||| | || ||||| || ||||| |
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| T |
26817385 |
ttaccttgcttctaagaatctccatagccatttttctaaagagattggctggcccacatgaccatcgatgttgttggtacctataagccttaaatgtact |
26817484 |
T |
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| Q |
218 |
cggcagttcatttttaacct |
237 |
Q |
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|||| |||||||||||||| |
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| T |
26817485 |
tggcaattcatttttaacct |
26817504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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