View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_2D_high_5 (Length: 593)
Name: NF0342_2D_high_5
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_high_5 |
 | |
|
| [»] scaffold1590 (1 HSPs) |
| | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 10407445 - 10407903
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtacaaca-----------ctttgtgtttatcttttaaaaaatt |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
10407445 |
ttgggatggtggttggagattcctcatgcatacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatt |
10407544 |
T |
|
| Q |
90 |
taaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccct |
189 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10407545 |
taaatagaacattgttcttttaaaaaaaatacttttttattttattatggacctcttttcacttatagaaccgaacctctagattcgtaggaacgaccct |
10407644 |
T |
|
| Q |
190 |
gtgcatgaggtaaattctcatgaaagagaggtgagtgacaatataccacttaaacatcaagtcttttccaactagaacctttataaaacaacacttttta |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10407645 |
gtgcatgaggtaaattctcatgaaagagaggtgagtgacaatataccacttaaacattaagtcttttccaactagaacctttataaaacaacac-tttta |
10407743 |
T |
|
| Q |
290 |
aaatatcatacttcttttacgatgtggaatatcggataatactagtgcatactaagagtttaatttctcatggtcaaaacaaaacttccataccaaaca- |
388 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10407744 |
taatatcatacttcttttatgatgtggaatatcggataatactagtgcatactaagagtttaatttctcatggtcaaaccaaaacttccataccaaacat |
10407843 |
T |
|
| Q |
389 |
tgggagaaaatagcttagagaaatcaaagagcacaatcacaatagacaaatattttgtgg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10407844 |
tgggagaaaatagcttagagaaatcaaagagcacaatcacaatagacaaatattttgtgg |
10407903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 35080804 - 35080688
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctag |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||||| |||| ||| ||||||| |
|
|
| T |
35080804 |
tttatcttttaaaaaatttaaataaaacattgttcttttaaaaaaaata--tttttattttattacggccctcttttcacttacagagtcgagcctctag |
35080707 |
T |
|
| Q |
172 |
attcgtaggaacgaccctg |
190 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
35080706 |
attcgtaggaacggccctg |
35080688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 2530941 - 2530823
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2530941 |
acacattgtatttatcttttaaaaaacttaaatagaacatt-ttcttttaagaaaaatacatttttattttattacgggcctcttttcacttacagagcc |
2530843 |
T |
|
| Q |
162 |
gaacctctagattcgtagga |
181 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
2530842 |
aaaccttcagattcgtagga |
2530823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 27530608 - 27530678
Alignment:
| Q |
120 |
acatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||| ||||| |
|
|
| T |
27530608 |
acatttttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccctg |
27530678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 11242358 - 11242235
Alignment:
| Q |
66 |
tttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaac |
165 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| | ||||||||||||| |||||||| | |
|
|
| T |
11242358 |
tttgtatttatcttttaaaaaaattaaatagaacattgttctttt-aaaagaatacgtttttattttattacgagtctcttttcacttacagagccgagc |
11242260 |
T |
|
| Q |
166 |
ctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
||| ||||| |||||||||||||| |
|
|
| T |
11242259 |
ctccggattcataggaacgaccctg |
11242235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 33037841 - 33037958
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt--nnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaa |
164 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
33037841 |
ttgtatttatcttttaaaaaatttaaataaaacattgttcttttaaaaaatatatacatttttattttattacgagcctcttttcggttacagagccgag |
33037940 |
T |
|
| Q |
165 |
cctctagattcgtaggaa |
182 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
33037941 |
cctctgaattcgtaggaa |
33037958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 26718993 - 26718865
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||| |||||| ||| |||||||||||||| || ||||||||||||| ||| || |
|
|
| T |
26718993 |
acactttgtatttatcttttaaaaattttaaatagaacattattctttaaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaacc |
26718894 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|| |||| ||||| |||||||| ||||| |
|
|
| T |
26718893 |
gagcctccggattcataggaacggccctg |
26718865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 26988737 - 26988609
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||| |||||| ||| |||||||||||||| || ||||||||||||| ||| || |
|
|
| T |
26988737 |
acactttgtatttatcttttaaaaattttaaatagaacattattctttaaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaacc |
26988638 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|| |||| ||||| |||||||| ||||| |
|
|
| T |
26988637 |
gagcctccggattcataggaacggccctg |
26988609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 34425964 - 34426076
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | | || |||||||||| ||| |||| || |
|
|
| T |
34425964 |
ttgtatttatcttttaaaaaattgaaatagaacattgttcttttaaaaaagatacatttttattttattacatgtcttttttcacttacagaaccgagcc |
34426063 |
T |
|
| Q |
167 |
tctagattcgtag |
179 |
Q |
| |
|
| |||||||||| |
|
|
| T |
34426064 |
ttcagattcgtag |
34426076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 22648780 - 22648654
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacattttta-ttttattataggcctcttttcacttatagagc |
160 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||| || |||||||||| |||||||| |||| |||||||||||| |||| |
|
|
| T |
22648780 |
acacattgtatttatcttttaaaaaatttaaatagaacattgttc--ttaaaaaatatacatttttatttttattacaggcttcttttcacttacagag- |
22648684 |
T |
|
| Q |
161 |
cgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
||| ||| |||||||||||||||||||| |
|
|
| T |
22648683 |
cgagtctccggattcgtaggaacgaccctg |
22648654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 24395791 - 24395916
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatag |
157 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||| || |||| |||||||||||||||||| || |||||| | ||| || |
|
|
| T |
24395791 |
tacaacaccttgtatttatcttttaaaaaatttaaatagaacattatt-ttttaaaaaaaatacatttttattttattacgggtttctttttatttacag |
24395889 |
T |
|
| Q |
158 |
agccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
24395890 |
agccgtacctccggattcgtaggaacg |
24395916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 40794368 - 40794323
Alignment:
| Q |
65 |
ctttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40794368 |
ctttgtatttgtcttttaaaaaatttaaataaaacattgttctttt |
40794323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 606210 - 606258
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
606210 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt |
606258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 2412144 - 2412191
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
2412144 |
acactttgtatttattttttaaaaaatttaaatagaacattgttcttt |
2412191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 564
Target Start/End: Original strand, 10407935 - 10408017
Alignment:
| Q |
481 |
ccacaattgttgtccaaagatatcattttcttnnnnnnnnntgttaactaatgcttcccaaacactagttaaagaaatcaaata |
564 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
10407935 |
ccacgattgttgtccaaagatatcattttcttaagaaaaa-tgttaactaatacctccgaaacactagttaaagaaatcaaata |
10408017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 14318429 - 14318382
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14318429 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcttt |
14318382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 33037767 - 33037827
Alignment:
| Q |
4 |
ggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtacaaca |
64 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
33037767 |
ggatggtggtttgaggttcctcatgtatacggtaatggttttcacctttgggtgtacaaca |
33037827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 36868990 - 36868872
Alignment:
| Q |
3 |
gggatggtggttggagattcctcatgcatacggtaataattttcacttttgg-----------atgtacaacactttgtgtttatcttttaaaaaattta |
91 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||| | |||||||| ||||| || ||| |||| |||| |||||||||||||||| ||| |
|
|
| T |
36868990 |
gggagggtggtttgagattcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaatta |
36868891 |
T |
|
| Q |
92 |
aataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
36868890 |
aatagaacattgttctttt |
36868872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 1366565 - 1366522
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
1366565 |
ttgtatttatcttataaaaaatttaaatagaacattgttctttt |
1366522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 2024681 - 2024638
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2024681 |
ttgtatttatctttaaaaaaatttaaatagaacattgttctttt |
2024638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 27530552 - 27530587
Alignment:
| Q |
75 |
atcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27530552 |
atcttttaaaaaatttaaatagaacattgttctttt |
27530587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 22875001 - 22875041
Alignment:
| Q |
65 |
ctttgtgtttatcttttaaaaaatttaaataaaacattgtt |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
22875001 |
ctttgtatttatcttttaaaaaatttaaatagaatattgtt |
22875041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 21665737 - 21665620
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctag |
171 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||| |||| || |
|
|
| T |
21665737 |
tttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaa-tacatttttattttattacgggtctcttttcacttacagagccgaccctccag |
21665639 |
T |
|
| Q |
172 |
attcgtaggaacgaccctg |
190 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
21665638 |
attcgtaggaacaaccctg |
21665620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 16097068 - 16097188
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||| ||||||||||| |||||||| || |
|
|
| T |
16097068 |
ttgtatttatcttttaaaaaatttaaatagaacattgttcttttaaacaaaatacatatttattttattacgggccacttttcacttacagagccgagcc |
16097167 |
T |
|
| Q |
167 |
tctagattcgtaggaacgacc |
187 |
Q |
| |
|
|| | |||||||||||||||| |
|
|
| T |
16097168 |
tccaaattcgtaggaacgacc |
16097188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 13800581 - 13800494
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagag |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
13800581 |
tttatcttttaaaaaatttaaatagaacattgttctttttaaaaaaatacatttttattttattacgaacctcttttcacttacagag |
13800494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 24035587 - 24035500
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcactta |
154 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
24035587 |
ttgtatttatcttttaaaaaatttaaatagaacattgttcttttaaaagaaatacgtttttattttattacgggcatcttttcactta |
24035500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 22727494 - 22727412
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcactta |
154 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
22727494 |
tttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaatacgtttttattttattacttgcctcttttcactta |
22727412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 38400853 - 38400978
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||||| | || ||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
38400853 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcttataaaaaatatatgtttttattttattgcgggtctcttttcacttacagagcc |
38400952 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacgacc |
187 |
Q |
| |
|
|||| | |||||||| |||||||| |
|
|
| T |
38400953 |
gaactttcggattcgtaagaacgacc |
38400978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 42029210 - 42029247
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42029210 |
tttatcttttaaaaaatttaaatagaacattgttcttt |
42029247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 7742115 - 7742055
Alignment:
| Q |
123 |
tttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaac |
183 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
7742115 |
tttttattttatcacgggcctcttttcacttacagaaccgaacctccggattcgtaggaac |
7742055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 11952624 - 11952588
Alignment:
| Q |
73 |
ttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11952624 |
ttatcttttaaaaaatttaaatagaacattgttcttt |
11952588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 37182760 - 37182824
Alignment:
| Q |
123 |
tttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgacc |
187 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||| |||| ||||| ||||||||||| |
|
|
| T |
37182760 |
tttttattttattacgggtctcttttcacttacagagccgagcctccggattcttaggaacgacc |
37182824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 6965063 - 6965110
Alignment:
| Q |
63 |
cactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
6965063 |
cactttgtatttatcttttaaaaaatataaatagaacattgctctttt |
6965110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 16227415 - 16227368
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
16227415 |
acaccttgtatttatcttttaaaaaatttaaatagaaaattgttcttt |
16227368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 11952575 - 11952514
Alignment:
| Q |
123 |
tttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
11952575 |
tttttattttattacgggtctcttttcacttacagaaccgagccttcagattcgtaggaacg |
11952514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 12694794 - 12694855
Alignment:
| Q |
122 |
atttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaac |
183 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |||||||| |||| |||||||| |||| |
|
|
| T |
12694794 |
atttttattttattacgggtctcttttcacttacagagccgagcctccggattcgtaagaac |
12694855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 593
Target Start/End: Original strand, 28181482 - 28181515
Alignment:
| Q |
560 |
aaatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
28181482 |
aaatacttcctccgtcccaaattgtatgacgttt |
28181515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 12337495 - 12337447
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
12337495 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
12337447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 28425757 - 28425709
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
28425757 |
acaccttgtatttatcttttaaaatttttaaatagaacattgttctttt |
28425709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 40636193 - 40636241
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
40636193 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
40636241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 23744857 - 23744981
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| || || |
|
|
| T |
23744857 |
ttgtatttatcttttaaaaaatttaattagaacattgttctttttaaaaaaatacatttttatttttttacgggcctcttttcacttatagagctgagcc |
23744956 |
T |
|
| Q |
167 |
tctagattcgtaggaacgaccctgt |
191 |
Q |
| |
|
|| | ||||||||||||| |||||| |
|
|
| T |
23744957 |
tccaaattcgtaggaacggccctgt |
23744981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 12419536 - 12419413
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||| |||||||||||||||| | |||||| || |
|
|
| T |
12419536 |
ttgtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaatacgttgttattttattacgggcctcttttcacttacaaagccgagcc |
12419437 |
T |
|
| Q |
167 |
tctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|| ||||| |||||||| ||||| |
|
|
| T |
12419436 |
tccggattcataggaacggccctg |
12419413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 9014228 - 9014119
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatag |
157 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
9014228 |
tacaacacattgtatttatcttttaaaaaatttaaataaaacattgttc-tttaaaaaaaatacggttttattttattacgggcctcttttcacttatag |
9014130 |
T |
|
| Q |
158 |
agccgaacctc |
168 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
9014129 |
agtcgagcctc |
9014119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 2611308 - 2611179
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt-nnnnnnnntacatttttattttattataggcctcttttcacttatagagc |
160 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| | |||||||||||||| ||| | |
|
|
| T |
2611308 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaaatacttttttattttattacaagcctcttttcacttgcagaac |
2611209 |
T |
|
| Q |
161 |
cgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
||| |||| ||||| |||||||||||||| |
|
|
| T |
2611208 |
cgagcctccggattcataggaacgaccctg |
2611179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 23859134 - 23859251
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||| || ||| |||||||||||||| ||| ||||||||||||| |||| ||| || |
|
|
| T |
23859134 |
ttgtatttatcttttaaaaaatttaaatagaacattattctcttaaacaaaatacgtttttattttattacaggtctcttttcacttacagagtcgagcc |
23859233 |
T |
|
| Q |
167 |
tctagattcgtaggaacg |
184 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
23859234 |
tccaaattcgtaggaacg |
23859251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17800339 - 17800276
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtacaaca |
64 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
17800339 |
ttgggatggtggtttgaaattcctcatgcatacggtagtgattttcacttttgggtgtacaaca |
17800276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 23020534 - 23020404
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatag |
157 |
Q |
| |
|
|||||||| || | ||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||| | |||||||||||||| || |
|
|
| T |
23020534 |
tacaacaccttatatttatcttttaaaaaatctaaatgaaacgttgttcttttaaaaaaaatacatttttattttattacggacctcttttcacttacag |
23020435 |
T |
|
| Q |
158 |
agccgaacctctagattcgtaggaacgaccct |
189 |
Q |
| |
|
| ||| |||| ||||||||||||||| |||| |
|
|
| T |
23020434 |
aaccg-gcctccagattcgtaggaacggccct |
23020404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 38971309 - 38971430
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||| || ||||||||||||| | |||| |
|
|
| T |
38971309 |
acaccttgtatttatcttttaaaaa-tttaaataaaatattgatcttttaaaaaaaatacatttttattttattacgggtctcttttcacttacaaagcc |
38971407 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacg |
184 |
Q |
| |
|
|| |||||||||||||| |||| |
|
|
| T |
38971408 |
gagtctctagattcgtagaaacg |
38971430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 20153253 - 20153297
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacatt |
102 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20153253 |
tacaacactttgtatttatcttttaaaaaatttaaataaaacatt |
20153297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 27237473 - 27237421
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27237473 |
tacaacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt |
27237421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 12981387 - 12981502
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| |||||||||||| || ||| ||||||| |
|
|
| T |
12981387 |
ttgtatttatcttttaaaaaaattaaatagaacattcttcttttataaaaa--acatttttattttattacgagcctcttttcacctacagaaccgaacc |
12981484 |
T |
|
| Q |
167 |
tctagattcgtaggaacg |
184 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
12981485 |
tccggattcgtaggaacg |
12981502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 6765727 - 6765680
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6765727 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcttt |
6765680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 9014880 - 9014709
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttgg----atgtacaacactttgtgtttatcttttaaaaaatttaaataa |
96 |
Q |
| |
|
|||||| |||| || ||| || |||||| |||||||| | |||||||| ||||| || ||| |||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
9014880 |
ttgggagggtgatttgaggttactcatgtatacggtagtgattttcacctttgggtatatatacgacacattgtatttatcttttacaaaatttaaataa |
9014781 |
T |
|
| Q |
97 |
aacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctc |
168 |
Q |
| |
|
|| |||| || || |||| ||||||||||||| ||| ||||||| ||||||||||||| |||| |
|
|
| T |
9014780 |
aagattgatcattaaaaaaaaatacagttttattttattacgggcttcttttcccttatagagccgagcctc |
9014709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 21763631 - 21763507
Alignment:
| Q |
64 |
actttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccga |
163 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||||| ||| |||||||||||||| | ||||||| ||||||||| | || |
|
|
| T |
21763631 |
actttgtatttatcttttaaaaaatttaaatagaacaatgttcttt--aaaaaaatacgtttttattttattacggatctctttttacttatagaacaga |
21763534 |
T |
|
| Q |
164 |
acctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||| ||||| ||||||||| ||||| |
|
|
| T |
21763533 |
gcctccagatttgtaggaacggccctg |
21763507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 26917715 - 26917649
Alignment:
| Q |
124 |
ttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||| | | |||||||||||||| ||||||||||| |
|
|
| T |
26917715 |
ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaacgaccctg |
26917649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 7398512 - 7398555
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
7398512 |
ttgtatttatctttcaaaaaatttaaatagaacattgttctttt |
7398555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 36902965 - 36902924
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctt |
108 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
36902965 |
ttgtatttatctattaaaaaatttaaatagaacattgttctt |
36902924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 561 - 593
Target Start/End: Complemental strand, 17196503 - 17196471
Alignment:
| Q |
561 |
aatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
17196503 |
aatacttcatctgtcccaaattgtatgacgttt |
17196471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 29077276 - 29077324
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
29077276 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
29077324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 561 - 593
Target Start/End: Complemental strand, 37277970 - 37277938
Alignment:
| Q |
561 |
aatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
37277970 |
aatacttcctccgtcccaaattgtatgacgttt |
37277938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 45758489 - 45758685
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgta-----------caacactttgtgtttatcttttaaaaaatt |
89 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| | |||||||| |||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
45758489 |
ttgggatggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatt |
45758588 |
T |
|
| Q |
90 |
taaataaaacattgttcttttnnnnnnnnta--catttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
45758589 |
taaatagaacattgttcttttaaaaaaaatatacatttttattttatttcggacctcttttcacttacagagccgagcctctggattcgtaggaacg |
45758685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 38547077 - 38546954
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||||| | | |||||||||||||| |||| |||||||||| |||||||| || |
|
|
| T |
38547077 |
ttgtatttatcttttaaaaaatttaaatagaacattgatctttaaaaaaaaattcctttttattttattacgggccccttttcacttgcagagccgatcc |
38546978 |
T |
|
| Q |
167 |
tctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|| | ||||||||||||| ||||| |
|
|
| T |
38546977 |
tccaaattcgtaggaacggccctg |
38546954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 38853589 - 38853719
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnn--tacatttttattttattataggcctcttttcacttatagag |
159 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38853589 |
acaccttgtatttatcatttaaaaaatttaaatagaacactgttcttttaaaaaaaaaatacatttttattttattatgtgcctcatttcacttatagag |
38853688 |
T |
|
| Q |
160 |
ccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||| |||| ||||||| |||||||||| |
|
|
| T |
38853689 |
ccgagtctctgatttcgtagaaacgaccctg |
38853719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 39134773 - 39134636
Alignment:
| Q |
58 |
tacaacactttgtgtttatctttt-aaaaaatttaaataaaacattgttcttttnnnnnnnn--tacatttttattttattataggcctcttttcactta |
154 |
Q |
| |
|
|||| ||| |||| |||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||| | ||||||||||||| |
|
|
| T |
39134773 |
tacagcaccttgtatttatctttttaaaaaatttaaatagaacattgttcttttaaaaaaaaaatacgtttttattttattacgagtctcttttcactta |
39134674 |
T |
|
| Q |
155 |
tagagccgaacctctagattcgtaggaacgaccctgtg |
192 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
39134673 |
cggagccgagcctccggattcgtaggaacggccctgtg |
39134636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5533307 - 5533501
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtaca-----------acactttgtgtttatctttt-aaaaaat |
88 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| | |||||||| |||| |||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
5533307 |
ttgggatggtggtttgagtttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaat |
5533406 |
T |
|
| Q |
89 |
ttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||| || ||||||||||||| |||| | | |||| ||||||||| |||| |
|
|
| T |
5533407 |
ttaaatagaatattgttctttt-aaaaaaatacatttttattttattacgggtctcttttcacttacagagtcaagcctccggattcgtagaaacg |
5533501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 43235794 - 43235722
Alignment:
| Q |
82 |
aaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcactta |
154 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43235794 |
aaaaaatttaaatagaacatttttctttagaaaaaaatacatttttattttattacaggcctcttttcactta |
43235722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 6889680 - 6889726
Alignment:
| Q |
64 |
actttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
6889680 |
actttgtatttatcttttaaaaaatataaatagaacattgctctttt |
6889726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 6891526 - 6891572
Alignment:
| Q |
64 |
actttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
6891526 |
actttgtatttatcttttaaaaaatataaatagaacattgctctttt |
6891572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 26804017 - 26804059
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
26804017 |
ttgtatttatcttttaaaaaatttaaatatagcattgttcttt |
26804059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 563 - 593
Target Start/End: Complemental strand, 52833883 - 52833853
Alignment:
| Q |
563 |
tacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52833883 |
tacttcctctgtcccaaattgtatgacgttt |
52833853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 561 - 593
Target Start/End: Complemental strand, 24589785 - 24589753
Alignment:
| Q |
561 |
aatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
24589785 |
aatacttcctccgtcccaaattgtatgacgttt |
24589753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 33170822 - 33170874
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
33170822 |
tacaacacattgtatttacgttttaaaaaatttaaatataacattgttttttt |
33170874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43235888 - 43235828
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtaca |
61 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||| || | |||||||| ||||| |||||| |
|
|
| T |
43235888 |
ttgggatggtggtttgaggttcctcatgtatacgatagtgattttcacctttgggtgtaca |
43235828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 44655808 - 44655856
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
44655808 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
44655856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 50881497 - 50881545
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
50881497 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
50881545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1590 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1590
Description:
Target: scaffold1590; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 305 - 193
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
305 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcttttaataaaaatacatttttattttattatgggcctctattcacttgcagagcc |
206 |
T |
|
| Q |
162 |
gaacctctagatt |
174 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
205 |
gagcctctggatt |
193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 7944641 - 7944442
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtacaaca-----------ctttgtgtttatcttttaaaaaatt |
89 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| | |||||||| ||||| ||||||||| | |||| ||||| |||||||||||| |
|
|
| T |
7944641 |
ttgggatggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatt |
7944542 |
T |
|
| Q |
90 |
taaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccct |
189 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||| ||| ||| | || |||||||||||||| |||| |
|
|
| T |
7944541 |
taaataaaacattgttcttttaaaaaaaatacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcgtaggaacggccct |
7944442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5973154 - 5973055
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||| ||| |||||| |
|
|
| T |
5973154 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcttttaaaacgaatacatttttattttattacagacctcttttcatttacagagcc |
5973055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 30674440 - 30674330
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctag |
171 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||| |||| || |
|
|
| T |
30674440 |
tttatcttttaaaacatttaaatagaacattgttctttaaaaaaaaatacgtttttattttattacgagcctcttttcacttacagagccgagcctccag |
30674341 |
T |
|
| Q |
172 |
attcgtaggaa |
182 |
Q |
| |
|
||||||||||| |
|
|
| T |
30674340 |
attcgtaggaa |
30674330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 11290240 - 11290288
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11290240 |
acaccttgtatttatcttttaaaaaatttaaataaaacattgttctttt |
11290288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 15167466 - 15167414
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15167466 |
tacaacactttatatttatcttttaaaaaatttaaatagaacattgttctttt |
15167414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 41677216 - 41677098
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaa-tttaaataaaacattgttcttttnnnnnnnn-tacatttttattttattataggcctcttttcacttatagagccgaa |
164 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
41677216 |
ttgtatttatcttttaaaaaaatttaaatagaacattgttcttttaaaaaaaaatacgtttttattttattataggtctcttttcactcacagagccgag |
41677117 |
T |
|
| Q |
165 |
cctctagattcgtaggaac |
183 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
41677116 |
cctccgaattcgtaggaac |
41677098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 8102973 - 8103069
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnn--tacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
8102973 |
ttgtatttatcttttaaaaaatttaaatataacattattattttaagaaaaaaatacatttttattttattataggcctcttttcatttacagagcc |
8103069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 34048752 - 34048630
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| || || |||||||||| |||||| |
|
|
| T |
34048752 |
acacattgtatttatcttttaaaatgtttaaatagaacattgttctttaaaaaaa---acatttttattttattacgggtctattttcacttacagagcc |
34048656 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacgacc |
187 |
Q |
| |
|
|| |||| | |||||||||||||||| |
|
|
| T |
34048655 |
gagcctccaaattcgtaggaacgacc |
34048630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 34789904 - 34789808
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccga |
163 |
Q |
| |
|
|||| |||||||||||| | ||||||||| ||||| |||||||| |||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
34789904 |
ttgtatttatcttttaagagatttaaatagaacatcgttcttttaaaaaaaatacatttttattttattacggaccttttttcacttatagagccga |
34789808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 38009236 - 38009151
Alignment:
| Q |
23 |
ctcatgcatacggtaataattttcacttttggatgtacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||| ||| |||| |||||||||| ||||| |||| |||| || | ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38009236 |
ctcatgtatatggtagtaattttcacctttgg--gtacgacacgttatatttatcttttaaaaattttaaatagaacattgttctttt |
38009151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 8646266 - 8646309
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8646266 |
ttgtatttatcttttaaaaaatttaaatagaacattgttctttt |
8646309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 23941138 - 23941095
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgtt |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23941138 |
acaccttgtatttatcttttaaaaaatttaaataaaacattgtt |
23941095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 34868219 - 34868108
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnn-tacatttttattttattataggcctcttttcacttatagagccgaac |
165 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||| || ||||||||||||| ||||||| | |
|
|
| T |
34868219 |
ttgtatttatcttttaaaaaatttaaatagaacattattctttaaaaaaaaaatacgtttttattttattatgggtctcttttcacttacggagccgagc |
34868120 |
T |
|
| Q |
166 |
ctctagattcgt |
177 |
Q |
| |
|
||| |||||||| |
|
|
| T |
34868119 |
ctcgagattcgt |
34868108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 9108554 - 9108596
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttt |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9108554 |
ttgtatttatcttttaaaaaatttaaatagaacattgttcttt |
9108596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 2952267 - 2952220
Alignment:
| Q |
63 |
cactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
2952267 |
cactttgtatttatcttttaaaaaatataaatagaacattgctctttt |
2952220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 9108610 - 9108665
Alignment:
| Q |
129 |
ttttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || ||||||| ||||| |||||||| |
|
|
| T |
9108610 |
ttttattatagacctcttttcacttacagaaccaaacctcttgattcataggaacg |
9108665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 14509970 - 14509899
Alignment:
| Q |
119 |
tacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||| ||||| ||| | |||||||||||||| |||| |
|
|
| T |
14509970 |
tacatttttattttattacgggcctattttcacttgcagaaccgaatctccaaattcgtaggaacgatcctg |
14509899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 41879242 - 41879285
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
41879242 |
ttgtatttatcttttaaaaaatataaatagaacattgttctttt |
41879285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 5942780 - 5942848
Alignment:
| Q |
119 |
tacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgacc |
187 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||| ||| | || ||||||||||||||||| |
|
|
| T |
5942780 |
tacatttttattttattacggtcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc |
5942848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 34789978 - 34789918
Alignment:
| Q |
4 |
ggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtacaaca |
64 |
Q |
| |
|
||||||||||| || ||| |||||| |||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
34789978 |
ggatggtggtttgatatttctcatgtatacggtagtgattttcacctttgggtgtacaaca |
34789918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 39332517 - 39332465
Alignment:
| Q |
8 |
ggtggttggagattcctcatgcatacggtaataattttcacttttggatgtac |
60 |
Q |
| |
|
||||||| ||| ||||||||| |||||||| | |||||||| ||||||||||| |
|
|
| T |
39332517 |
ggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtac |
39332465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 52468275 - 52468452
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttggatgtacaa-----------cactttgtgtttatcttttaaaaaatt |
89 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||| | |||||||| |||||||||| || ||| |||| |||||||||||||||||| |
|
|
| T |
52468275 |
ttgggaaggtggtttgaggttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatt |
52468374 |
T |
|
| Q |
90 |
taaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctc |
168 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||||||| || ||||||||||| || |||||||| |||| |
|
|
| T |
52468375 |
taaatagaacattgttctttt-aaaaaaatacgtttttattttattacagacctcttttcacctacagagccgagcctc |
52468452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 39329442 - 39329317
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatag |
157 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| | |||||||||||||| || |||||||||||||| | |||||||||||||| || |
|
|
| T |
39329442 |
tacaacaccttgtatttatcttttaaaaaatttaaagagaacattgttcttttaaaaaaaatatgtttttattttattacggacctcttttcacttacag |
39329343 |
T |
|
| Q |
158 |
agccgaacctctagattcgtaggaac |
183 |
Q |
| |
|
| |||| |||| | |||||||||||| |
|
|
| T |
39329342 |
aaccgagcctccaaattcgtaggaac |
39329317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 30507158 - 30507037
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnn---tacatttttattttattataggcctcttttcacttatagagccgaacctc |
168 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||| | | ||| |||| |
|
|
| T |
30507158 |
tttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaaaaatacatttttattttattatgggtctcttttcacttacaaaatcgagcctc |
30507059 |
T |
|
| Q |
169 |
tagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30507058 |
cggattcgtaggaacgaccctg |
30507037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 24614019 - 24614143
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnn--tacatttttattttattataggcctcttttcacttatagagccgaa |
164 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
24614019 |
ttgtatttatcttttaaaaaatttaaatagaacattgttctttaaaaaaaaaaatacatttt-attttattacgggcctcttttcacttacagagctgaa |
24614117 |
T |
|
| Q |
165 |
cctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |
|
|
| T |
24614118 |
cctccagattcgtaagaacggccctg |
24614143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 39655298 - 39655172
Alignment:
| Q |
64 |
actttgtgtttatcttttaaaaaatttaaataaaacattgttc-ttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccg |
162 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| |||| || |||||||||||||| |||||||||||| || |||| || |
|
|
| T |
39655298 |
actttgtatttatcttttaaaaaatttaaatagaacattgttctttttaaaaatagaacgtttttattttattacgagcctcttttcacctacagagtcg |
39655199 |
T |
|
| Q |
163 |
aacctctagattcgtaggaacgaccct |
189 |
Q |
| |
|
| |||| ||||| |||||||||||||| |
|
|
| T |
39655198 |
agcctccagatttgtaggaacgaccct |
39655172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 24397005 - 24397123
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttctttt-nnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctcta |
170 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| | | ||||||||||||| ||||| || ||||| |
|
|
| T |
24397005 |
tttatcttttaaaaaatttaaataaaatattgttcttttaaaaaaaaatacgtttttattttattacatgtctcttttcacttacagagctgagcctctg |
24397104 |
T |
|
| Q |
171 |
gattcgtaggaacgaccct |
189 |
Q |
| |
|
|||| ||| | |||||||| |
|
|
| T |
24397105 |
gatttgtaagtacgaccct |
24397123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 11906891 - 11906826
Alignment:
| Q |
119 |
tacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
11906891 |
tacatttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacg |
11906826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 5893130 - 5893201
Alignment:
| Q |
119 |
tacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||||| |||| | ||| ||||||||| ||||| |
|
|
| T |
5893130 |
tacatttttattttattacggacctcttttcacttacagagccgagcctccaaatttgtaggaacggccctg |
5893201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 36118504 - 36118377
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
36118504 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgttcattt-aaaaaaatacgtttttattttattacgagcctcttttcacttacaaagcc |
36118406 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|| | || ||||||||||||| ||||| |
|
|
| T |
36118405 |
gagcttccgaattcgtaggaacggccctg |
36118377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 45656246 - 45656279
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgtt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45656246 |
tttatcttttaaaaaatttaaataaaacattgtt |
45656279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 47129053 - 47129154
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||| | |||||||||||| || |||||||| || |
|
|
| T |
47129053 |
ttgtatttatcttttaaaaaatataaatagaacattgttcttttaaaaaaaatacattttgattttatcactggcctcttttcatttccagagccgagcc |
47129152 |
T |
|
| Q |
167 |
tc |
168 |
Q |
| |
|
|| |
|
|
| T |
47129153 |
tc |
47129154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 51691956 - 51691837
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||||| ||||| |||||||| |||||||||||||| |||||||| || |
|
|
| T |
51691956 |
ttgtatttatcttttaaaaaatttaaatagaacattgctcttttaaaaaaaatacat-----ttttattacgagcctcttttcacttgcagagccgagcc |
51691862 |
T |
|
| Q |
167 |
tctagattcgtaggaacgaccctgt |
191 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
51691861 |
tccggattcgtaggaacggccctgt |
51691837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 36362916 - 36362869
Alignment:
| Q |
63 |
cactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
36362916 |
cactttgtatttatcttttaaaaaatttaaacagagcattgttctttt |
36362869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 2790777 - 2790739
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
2790777 |
tttatcttttaaaaaatataaatagaacattgttctttt |
2790739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 36178733 - 36178778
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttct |
107 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
36178733 |
acaccttgtatttatcttttaaataatttaaatagaacattgttct |
36178778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 10978961 - 10979009
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
10978961 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
10979009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 15735156 - 15735196
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttct |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
15735156 |
ttgtatttatcttttaaaaaatttaaatagaacactgttct |
15735196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 16922375 - 16922327
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
16922375 |
acactttatatttatcttttaaaaaatataaatagaacattgctctttt |
16922327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 36362854 - 36362798
Alignment:
| Q |
123 |
tttttattttattataggcctcttttcacttatagagccgaacctctagattcgtag |
179 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
36362854 |
tttttattttattatgggtctcttttcacttacagagtcaggcctctagattcgtag |
36362798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 561 - 593
Target Start/End: Original strand, 37730749 - 37730781
Alignment:
| Q |
561 |
aatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
37730749 |
aatacttcctccgtcccaaattgtatgacgttt |
37730781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 24112 - 23993
Alignment:
| Q |
1 |
ttgggatggtggttggagattcctcatgcatacggtaataattttcacttttgg-----------atgtacaacactttgtgtttatcttttaaaaaatt |
89 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||||| |||||||||||||| || ||| |||| |||| |||||||||||||||||| |
|
|
| T |
24112 |
ttgggagggtggtttgagattccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatt |
24013 |
T |
|
| Q |
90 |
taaataaaacattgttcttt |
109 |
Q |
| |
|
|||||| || |||||||||| |
|
|
| T |
24012 |
taaatagaatattgttcttt |
23993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 32319206 - 32319112
Alignment:
| Q |
58 |
tacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcactta |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||||||||||| || ||| |||||||||| |
|
|
| T |
32319206 |
tacaacactttgtatttatcttttaaaaaatttaaatagaacattattcttt--aaaaacttacatttttattttattacagacctattttcactta |
32319112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 26279611 - 26279723
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctag |
171 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||| | |||||||||||||| | || ||||||| | |
|
|
| T |
26279611 |
tttatcttttaaaaaatttaaatagaacattgttctttt-aaaaaaatacgtttttattttactatggacctcttttcacttacaaagttgaacctccaa |
26279709 |
T |
|
| Q |
172 |
attcgtaggaacga |
185 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
26279710 |
attcataggaacga |
26279723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 21582835 - 21582878
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21582835 |
ttgtatttatcttttaaaaaatataaataaaacattgttctttt |
21582878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 25855491 - 25855601
Alignment:
| Q |
73 |
ttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctaga |
172 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||| ||| | | |||| |||| ||| |
|
|
| T |
25855491 |
ttatcttttaaaaaatttaaatagaacattgttctttaaaaaaacatacatttttattttattacgggccttttttcatttacataaccgagcctccaga |
25855590 |
T |
|
| Q |
173 |
ttcgtaggaac |
183 |
Q |
| |
|
| || |||||| |
|
|
| T |
25855591 |
tgcgcaggaac |
25855601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 3953938 - 3953837
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||| | |||||||||||| || ||||| ||||| |
|
|
| T |
3953938 |
ttgtatttatcttttaaaaaatataaatagaacattgttcttttaaaaaaaatacattttaattttatcactggcctcttttcatttccagagcggaacc |
3953839 |
T |
|
| Q |
167 |
tc |
168 |
Q |
| |
|
|| |
|
|
| T |
3953838 |
tc |
3953837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 593
Target Start/End: Complemental strand, 34663725 - 34663684
Alignment:
| Q |
552 |
aagaaatcaaatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
34663725 |
aagaaatcaaatactccctccgtcccaaattgtatgacgttt |
34663684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 49393153 - 49393269
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| | || |||||||||| | |||||| || |
|
|
| T |
49393153 |
ttgtatttatcttttaaaaaatttaaagagaacattgttctttaaaaaaaaatacatttttattttattacgagtcttttttcacttaca-agccgagcc |
49393251 |
T |
|
| Q |
167 |
tctagattcgtaggaacg |
184 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
49393252 |
tccggattcgtaggaacg |
49393269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 42453463 - 42453511
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42453463 |
acaccttgtatttatcttttaaaaaatttaaattgaacattgttctttt |
42453511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 8420390 - 8420433
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
8420390 |
ttgtatttatcttttaaaaaatttaaatagaacattattctttt |
8420433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 52973437 - 52973495
Alignment:
| Q |
126 |
ttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacg |
184 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
52973437 |
ttattttattatgggcctcttttctcttacagaatcgagcctctaaattcgtaggaacg |
52973495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 18372542 - 18372590
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
18372542 |
acaccttgtatttatcttttaaaaaatataaatagaacattgctctttt |
18372590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27078615 - 27078575
Alignment:
| Q |
63 |
cactttgtgtttatcttttaaaaaatttaaataaaacattg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
27078615 |
cactttgtatttatcttttaaaaaatataaatagaacattg |
27078575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27084412 - 27084372
Alignment:
| Q |
63 |
cactttgtgtttatcttttaaaaaatttaaataaaacattg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
27084412 |
cactttgtatttatcttttaaaaaatataaatagaacattg |
27084372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 36179544 - 36179476
Alignment:
| Q |
122 |
atttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | || | |||| |||||||||||||| ||||| |
|
|
| T |
36179544 |
atttttattttattacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacggccctg |
36179476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 561 - 593
Target Start/End: Complemental strand, 42490582 - 42490550
Alignment:
| Q |
561 |
aatacttcctctgtcccaaattgtatgacgttt |
593 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
42490582 |
aatacttcctccgtcccaaattgtatgacgttt |
42490550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 20611908 - 20611975
Alignment:
| Q |
123 |
tttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctg |
190 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
20611908 |
tttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctg |
20611975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 30121821 - 30121941
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
30121821 |
acaccttgtatttattttttaaaaaatttaaataaaacattgttcttt--aaaaaaaaacacttttattttattacgagcctattttcacttatagagcc |
30121918 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaacg |
184 |
Q |
| |
|
|||||| | ||||||| ||||| |
|
|
| T |
30121919 |
caacctccatattcgtatgaacg |
30121941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 27131185 - 27131120
Alignment:
| Q |
123 |
tttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccc |
188 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||| || ||||| ||||||| |||||||||| |
|
|
| T |
27131185 |
tttttattttattacagatctcttttcatttatagagttgagcctctggattcgttggaacgaccc |
27131120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 27994774 - 27994860
Alignment:
| Q |
19 |
attcctcatgcatacggtaataattttcacttttggatgtacaacactttgtgtttatcttttaaaaaatttaaataaaacattgttct |
107 |
Q |
| |
|
|||||||||| |||||||| | |||||||| |||| ||||| ||| |||| | ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
27994774 |
attcctcatgtatacggtagtgattttcacctttgagtgtaccgcacgttgtat--atcttttaaaaaaattatataaaacattgttct |
27994860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 6159497 - 6159541
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttc |
106 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
6159497 |
acacattgtatttatcttttaaaaaatataaatagaacattgttc |
6159541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 206536 - 206417
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagcc |
161 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
206536 |
acaccttgtatttatcttttacaaaatttaaatagaacattcttctttaaaaaaaaatacatttttattttattacaaacctcttttcacttacagagcc |
206437 |
T |
|
| Q |
162 |
gaacctctagattcgtaggaac |
183 |
Q |
| |
|
| |||| ||||||||||||| |
|
|
| T |
206436 |
g--cctcaggattcgtaggaac |
206417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 230896 - 230780
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttcttttnnnnnnnntacatttttattttattataggcctcttttcacttatagagccgaacctctag |
171 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||| ||| |||| | || | |
|
|
| T |
230896 |
tttatcttttaacaaatttaaatagaacattgttcttttaaaaaatatacatttt--ttttattacgggcctcttttcccttacagatccgagcttccgg |
230799 |
T |
|
| Q |
172 |
attcgtaggaacgaccctg |
190 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
230798 |
attcgtaggaacggccctg |
230780 |
T |
|
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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 40201 - 40273
Alignment:
| Q |
119 |
tacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctgt |
191 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||||||| |||||| |||| ||||||||| |
|
|
| T |
40201 |
tacatttttattttattacgaacctcttttcacttacagagcagaacctccagattcacaggatcgaccctgt |
40273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 138261 - 138333
Alignment:
| Q |
119 |
tacatttttattttattataggcctcttttcacttatagagccgaacctctagattcgtaggaacgaccctgt |
191 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||||||| |||||| |||| ||||||||| |
|
|
| T |
138261 |
tacatttttattttattacgaacctcttttcacttacagagcagaacctccagattcacaggatcgaccctgt |
138333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 38981 - 39024
Alignment:
| Q |
62 |
acactttgtgtttatcttttaaaaaatttaaataaaacattgtt |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
38981 |
acaccttgtatttatcttttaaaaaatttaaatagaacattgtt |
39024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 106604 - 106642
Alignment:
| Q |
72 |
tttatcttttaaaaaatttaaataaaacattgttctttt |
110 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
106604 |
tttatcttttaaaaaatataaatagaacattgttctttt |
106642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 173552 - 173515
Alignment:
| Q |
67 |
ttgtgtttatcttttaaaaaatttaaataaaacattgt |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
173552 |
ttgtatttatcttttaaaaaatttaaatagaacattgt |
173515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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