View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_10 (Length: 705)

Name: NF0342_2D_low_10
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_10
NF0342_2D_low_10
[»] chr7 (1 HSPs)
chr7 (12-692)||(29563196-29563876)


Alignment Details
Target: chr7 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 12 - 692
Target Start/End: Complemental strand, 29563876 - 29563196
Alignment:
Q  12 atggacatcaaatggtctatacgtaacaagtatataatcttggtacacatccatcacaattggtttcgcaaacaatggttttcgacagagcaatgagctt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563876 atggacatcaaatggtctatacgtaacaagtatataatcttggtacacatccatcacaattggtttcgcaaacaatggttttcgacagagcaatgagctt 29563777  T
Q  112 tgatcaaggtgatatcttgggtaaaagagcaattcatacctgagataaataaggagacgtaagagaccattgaatgtagaataaaatgtttcgtatgttg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29563776 tgatcaaggtgatatcttgggtaaaagagcaattcatacctgagataaataaggagacataagagaccattgaatgtagaataaaatgtttcgtatgttg 29563677  T
Q  212 cagaatgatacagttaatgttgcaaaaattatagttttaagttcaatctgacctagactttgaaaagcaaaataagtgggtaaaaaactgaacatccttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29563676 cagaatgatacagttaatgttgcaaaaattatagttttaagttcaatcagacctagactttgaaaagcaaattaagtgggtaaaaaactgaacatccttt 29563577  T
Q  312 aaatcaggcttttccaggcatgtacattgttaaacaacaatcagctnnnnnnnttatttttgacaaacaatataatttgcaagaaccaaccacatgaaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  29563576 aaatcaggcttttccaggcatgtacattgttaaacaacaatcagctaaaaaaattatttttgacaaacaatataatttgcaagaaccaaccacatgaaat 29563477  T
Q  412 acgtaagcaaataaaagtatctcacgtgttggaagaatcaatatagttgcagacaacgacaatctttcccagccatagcaagcccttacactgaatcttt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563476 acgtaagcaaataaaagtatctcacgtgttggaagaatcaatatagttgcagacaacgacaatctttcccagccatagcaagcccttacactgaatcttt 29563377  T
Q  512 tgttcctgggtaacatctccaaagactctccatcttttcattcgtatatcatacaatatcaaaccatgaagaccagcaaccgctaagtacattccatcct 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29563376 tgttcctgggtaacatctccaaagactctccatcttttcattcgtatatcatacaatatcaaaccatgaagaccagcaaccgccaagtacattccatcct 29563277  T
Q  612 gactagctgccacatattgaacaggccagttttgggaaatataagaaacctgtggaaattttaaaattttagaagtgatgt 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563276 gactagctgccacatattgaacaggccagttttgggaaatataagaaacctgtggaaattttaaaattttagaagtgatgt 29563196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University