View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_12 (Length: 672)

Name: NF0342_2D_low_12
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_12
NF0342_2D_low_12
[»] chr1 (18 HSPs)
chr1 (3-574)||(28446041-28446608)
chr1 (72-556)||(49030302-49030768)
chr1 (3-127)||(33617644-33617768)
chr1 (3-127)||(33401408-33401532)
chr1 (3-117)||(28474792-28474906)
chr1 (3-87)||(39650196-39650280)
chr1 (3-81)||(28475982-28476060)
chr1 (3-64)||(5602944-5603005)
chr1 (3-68)||(3792296-3792361)
chr1 (3-89)||(35563364-35563446)
chr1 (2-79)||(45691050-45691127)
chr1 (69-126)||(48027051-48027108)
chr1 (3-80)||(50065478-50065555)
chr1 (2-78)||(50069237-50069313)
chr1 (3-78)||(3792560-3792635)
chr1 (30-89)||(35563532-35563591)
chr1 (2-75)||(45691196-45691269)
chr1 (2-75)||(45691338-45691411)
[»] chr4 (26 HSPs)
chr4 (3-655)||(51719234-51719852)
chr4 (364-556)||(628452-628631)
chr4 (6-127)||(24974100-24974221)
chr4 (2-127)||(12586752-12586876)
chr4 (3-119)||(45237411-45237527)
chr4 (3-127)||(55527867-55527991)
chr4 (6-127)||(36501819-36501940)
chr4 (3-82)||(33164504-33164583)
chr4 (446-555)||(38653572-38653681)
chr4 (5-119)||(23283737-23283851)
chr4 (6-87)||(40312788-40312869)
chr4 (6-87)||(40322864-40322945)
chr4 (2-82)||(36172164-36172244)
chr4 (618-652)||(628706-628740)
chr4 (3-80)||(34235705-34235782)
chr4 (3-187)||(628088-628272)
chr4 (3-79)||(28798147-28798223)
chr4 (119-187)||(40923737-40923805)
chr4 (3-58)||(28796620-28796675)
chr4 (33-80)||(33161660-33161707)
chr4 (3-66)||(47177912-47177975)
chr4 (119-177)||(628255-628313)
chr4 (11-81)||(36174579-36174649)
chr4 (3-76)||(38677667-38677740)
chr4 (2-87)||(54208179-54208264)
chr4 (29-81)||(46817432-46817484)
[»] chr5 (22 HSPs)
chr5 (9-492)||(6705642-6706107)
chr5 (2-127)||(759159-759284)
chr5 (3-127)||(28677886-28678010)
chr5 (3-127)||(11135741-11135865)
chr5 (2-119)||(34016001-34016118)
chr5 (3-75)||(17644606-17644678)
chr5 (6-127)||(5506645-5506766)
chr5 (7-82)||(30491794-30491869)
chr5 (33-127)||(30489753-30489847)
chr5 (3-81)||(34017619-34017697)
chr5 (3-76)||(6158948-6159020)
chr5 (11-86)||(19401994-19402069)
chr5 (3-76)||(17636344-17636417)
chr5 (608-652)||(6705562-6705606)
chr5 (3-82)||(6702370-6702449)
chr5 (3-82)||(33144183-33144262)
chr5 (3-82)||(40008712-40008791)
chr5 (3-76)||(1145141-1145214)
chr5 (3-64)||(6636919-6636980)
chr5 (3-76)||(7164754-7164827)
chr5 (31-76)||(7826133-7826178)
chr5 (3-58)||(40266611-40266667)
[»] chr3 (36 HSPs)
chr3 (3-459)||(53814188-53814639)
chr3 (376-652)||(21566478-21566743)
chr3 (83-652)||(13840156-13840722)
chr3 (364-568)||(39685544-39685736)
chr3 (3-274)||(44430418-44430687)
chr3 (3-127)||(15040681-15040805)
chr3 (119-210)||(4970742-4970833)
chr3 (3-126)||(19872096-19872219)
chr3 (9-127)||(7665739-7665857)
chr3 (9-127)||(34082845-34082963)
chr3 (3-76)||(50663875-50663948)
chr3 (3-82)||(6162681-6162760)
chr3 (64-119)||(35069249-35069304)
chr3 (3-86)||(42947375-42947458)
chr3 (3-107)||(39645774-39645878)
chr3 (3-82)||(53827660-53827739)
chr3 (3-76)||(54528961-54529034)
chr3 (367-411)||(3860615-3860659)
chr3 (3-81)||(4969875-4969953)
chr3 (117-274)||(39685307-39685462)
chr3 (63-111)||(4971184-4971232)
chr3 (4-48)||(13843626-13843670)
chr3 (2-82)||(15042005-15042085)
chr3 (3-107)||(39685212-39685316)
chr3 (3-67)||(40517537-40517601)
chr3 (608-651)||(39685789-39685832)
chr3 (3-82)||(42381615-42381694)
chr3 (2-76)||(8150168-8150242)
chr3 (241-287)||(21566861-21566907)
chr3 (29-87)||(42993592-42993650)
chr3 (3-117)||(54525802-54525916)
chr3 (31-76)||(30533883-30533928)
chr3 (3-76)||(47064864-47064937)
chr3 (499-555)||(11423261-11423317)
chr3 (3-79)||(42950990-42951066)
chr3 (3-87)||(53824291-53824374)
[»] chr6 (17 HSPs)
chr6 (3-302)||(17436322-17436619)
chr6 (375-529)||(17436173-17436327)
chr6 (237-556)||(25403549-25403853)
chr6 (3-117)||(32274184-32274298)
chr6 (3-87)||(14153354-14153438)
chr6 (41-112)||(31483681-31483752)
chr6 (3-82)||(35060894-35060973)
chr6 (3-137)||(12703815-12703948)
chr6 (3-84)||(31522532-31522613)
chr6 (2-143)||(24326943-24327084)
chr6 (4-84)||(4321735-4321815)
chr6 (404-549)||(34131515-34131664)
chr6 (20-107)||(4319101-4319188)
chr6 (3-76)||(806545-806618)
chr6 (611-652)||(25403440-25403481)
chr6 (119-187)||(25403901-25403969)
chr6 (19-76)||(7203956-7204013)
[»] scaffold0246 (3 HSPs)
scaffold0246 (323-556)||(2369-2587)
scaffold0246 (3-187)||(2747-2931)
scaffold0246 (608-652)||(2259-2303)
[»] scaffold0041 (3 HSPs)
scaffold0041 (365-652)||(23829-24116)
scaffold0041 (3-187)||(23487-23671)
scaffold0041 (237-290)||(23719-23772)
[»] chr7 (21 HSPs)
chr7 (364-568)||(41798906-41799098)
chr7 (6-127)||(5126-5247)
chr7 (2-119)||(19365357-19365474)
chr7 (364-513)||(44552418-44552554)
chr7 (7-124)||(38386178-38386295)
chr7 (3-139)||(5061671-5061806)
chr7 (3-166)||(44552026-44552189)
chr7 (3-64)||(28138759-28138820)
chr7 (3-80)||(38790884-38790962)
chr7 (3-76)||(26009369-26009442)
chr7 (6-127)||(38047649-38047770)
chr7 (3-83)||(31823589-31823669)
chr7 (608-652)||(41799150-41799194)
chr7 (3-49)||(33839474-33839520)
chr7 (3-76)||(26011958-26012031)
chr7 (3-87)||(1537240-1537324)
chr7 (2-82)||(44552701-44552781)
chr7 (241-279)||(41798791-41798829)
chr7 (3-64)||(28139452-28139513)
chr7 (237-290)||(44552309-44552362)
chr7 (121-177)||(44552195-44552251)
[»] chr2 (22 HSPs)
chr2 (2-116)||(8273244-8273358)
chr2 (237-568)||(942773-943090)
chr2 (3-81)||(12967270-12967349)
chr2 (2-68)||(22787998-22788064)
chr2 (3-92)||(22727662-22727751)
chr2 (6-86)||(11712961-11713041)
chr2 (237-290)||(24929087-24929140)
chr2 (7-187)||(25678782-25678962)
chr2 (72-187)||(943138-943252)
chr2 (3-82)||(11573633-11573712)
chr2 (3-82)||(18387241-18387320)
chr2 (3-58)||(25389873-25389928)
chr2 (3-48)||(20685006-20685051)
chr2 (3-76)||(37893013-37893086)
chr2 (609-649)||(942669-942709)
chr2 (324-403)||(24928982-24929059)
chr2 (364-403)||(25678596-25678635)
chr2 (119-177)||(24929186-24929244)
chr2 (2-87)||(2154261-2154346)
chr2 (3-87)||(18394964-18395048)
chr2 (3-87)||(22496070-22496154)
chr2 (119-167)||(25678751-25678799)
[»] chr8 (12 HSPs)
chr8 (323-543)||(9387434-9387639)
chr8 (3-127)||(5967191-5967315)
chr8 (3-127)||(34279515-34279639)
chr8 (3-219)||(9418587-9418803)
chr8 (3-119)||(31762241-31762357)
chr8 (3-86)||(33220782-33220865)
chr8 (72-187)||(9387824-9387939)
chr8 (3-64)||(3588562-3588623)
chr8 (3-76)||(43640978-43641051)
chr8 (119-187)||(9387773-9387841)
chr8 (3-65)||(3588340-3588402)
chr8 (237-290)||(9387672-9387725)
[»] scaffold0262 (1 HSPs)
scaffold0262 (430-553)||(8617-8739)
[»] scaffold1063 (1 HSPs)
scaffold1063 (3-84)||(1475-1556)
[»] scaffold0163 (1 HSPs)
scaffold0163 (3-67)||(35776-35840)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 3 - 574
Target Start/End: Complemental strand, 28446608 - 28446041
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||| ||  |||| |||||||| ||||||||||||| |||| ||| |||||||||||    
T  28446608 gaattttgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtacaa-ttacaacgtaa 28446510  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 202  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||  || ||||||||||||| ||||| |||||||| || ||    
T  28446509 cttaacacacgttgcgtgacttaactcacgctagtacaaaatgtaacgcaacttaagtcacactgcgtgacttaaaccatgctagacataaaactggaac 28446410  T
Q  203 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgc 302  Q
    |||||||| ||||||||||||||| | ||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||    
T  28446409 aaagcaagtaccaaaacagaatttgagtagcgt--gagttaagtcacgctagttttaacactagcgtgagttaactcgcgttggtgttgatgctatatgc 28446312  T
Q  303 gcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttgg 402  Q
    ||| ||||||| | || || ||||||||||| ||||||||||   |||||||||| |||  |||||||||||||||||||||||||||||||||| ||||    
T  28446311 gcatcagacttgcatggcaatggcagtggcaatagctgctgc---cttgttccatctgtccctgtttagtgaatatgcaatcattcaataataatattgg 28446215  T
Q  403 tacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttagaaacacaattttaac-aaaaaataatgtaaa 501  Q
    |||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  28446214 tacaaccattgattgattcatccagaactcataatttagagatcatgcagtcattcaataataatttagaaacacaattttaacgaaaaaataacgtaaa 28446115  T
Q  502 tgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag-aaatactacaagtcata 574  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28446114 tgtcataaataaggccaaccgtgcaaatgtaaatatagtacaaccaaaatgtcaagaaaatactacaagtcata 28446041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 72 - 556
Target Start/End: Original strand, 49030302 - 49030768
Alignment:
Q  72 ttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtg 171  Q
    |||||| ||| |||||||||||  ||||| |||||| | | || || |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||    
T  49030302 ttaacacgcgctagtgcaaattggaacgtgacttaagacaggtagcctgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttg 49030401  T
Q  172 acttaaaccacgctaggcataaaacaggtacaaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtga 271  Q
    ||||||  ||||||||  ||    | ||||||||||| |||||||||       | | ||||||  ||||||||||||||||||||||||||||  ||||    
T  49030402 acttaagtcacgctagttatgtctctggtacaaagcatgcaccaaaaacttcaatgagtagcgt--gagttaagtcacgctagttttaacactac-gtga 49030498  T
Q  272 gttgactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttag 371  Q
    ||| |||| ||||||||||  || |||   ||| ||||||     || |||||||| ||||||||||||||||  | ||||||| |   || || |||||    
T  49030499 gttaactcacgttggtgcttctgctatgcacgctgcagaccagactggcagtggcaatggcagtagctgctgc--ctttgttccttcatttcctatttag 49030596  T
Q  372 tgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttag 471  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||||            ||||||  |||||    
T  49030597 tgaacatgcaattattcaataataattttggtacagccattcattgattcaaccagaactcataatttagagaacg-----------aataat--tttag 49030683  T
Q  472 aaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaa 556  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||  ||||||||| ||||||||||    
T  49030684 aaacacaattttaacgaaaaataaggtaaatgtcataaataagcccaaccgtgcaaatgtaaaagtagtacaactaaaatgtcaa 49030768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 33617644 - 33617768
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||| | ||||||||||||| |||||||||||| |||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgcgctagtgcaaattataacgtaa 33617743  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| ||| || ||||||||||||    
T  33617744 cttaagataagtagcgtgacttaac 33617768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 33401408 - 33401532
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| |||||||||  |||||| ||||||||||||||||||||||| ||| |||| ||| || | ||||||||||||| |||||||||||| |||||||    
T  33401408 gaattttgctcattagtcaaatggattcgctcattctcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaattataacgtaa 33401507  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| ||| || ||||||||||||    
T  33401508 cttaagataagtagcgtgacttaac 33401532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 28474792 - 28474906
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||||||||| |||| ||||||| |||| ||||| ||  |||| |||||||| ||||||||||||  || |||||||||||||||||    
T  28474792 gaattctgctcattacccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaacatgcactactgcaaattacaacgtaa 28474891  T
Q  103 cttaacatatgttgc 117  Q
    ||||| ||| |||||    
T  28474892 cttaagatacgttgc 28474906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 39650196 - 39650280
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    ||||||||||||||||| |||||  |||||||||||  |||||||||  ||||||| |||||||| ||||||||||||| |||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgctagtg 39650280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 28476060 - 28475982
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 81  Q
    |||||||||||||||||||||||  | |||||||||||||||||||| | | |||| |||||||  |||||||||||||    
T  28476060 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaacatgcg 28475982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 5602944 - 5603005
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 64  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||||| |||||||| |||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccct 5603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 3792296 - 3792361
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgt 68  Q
    |||||||||||||||||||||||| |   |||||||||||| |||||  ||||||||||| |||||    
T  3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaatacccttacgt 3792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 35563364 - 35563446
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgca 89  Q
    |||||||||||||||    |||| |||||||||||| |||||||||| ||  |||| ||||| || ||||||||||||| |||||||    
T  35563364 gaattctgctcatta----aatggattcgctcattcccaaagtaaatgactgaaatgcccctgcgcatgttaacatgcgctagtgca 35563446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 45691127 - 45691050
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatg 79  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||||||   ||||||| |||||||  |||||||||||    
T  45691127 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaacatg 45691050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 48027108 - 48027051
Alignment:
Q  69 atgttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaa 126  Q
    ||||||| |||||||||||||||||| ||||||| |||| ||| || |||||||||||    
T  48027108 atgttaatatgcgttagtgcaaattataacgtaatttaagataagtagcgtgacttaa 48027051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 50065478 - 50065555
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgc 80  Q
    ||||||| ||||||||| ||||| | |||||||||| |||||||||| ||| |||| || || || ||||||||||||    
T  50065478 gaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgaccgaaatgcctctgcgcatgttaacatgc 50065555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 50069313 - 50069237
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacat 78  Q
    ||||||||||||||||||||||     |||||||||| ||||||||||  ||||||| ||||| || ||||||||||    
T  50069313 ggaattctgctcattacccaaacagcatcgctcattcccaaagtaaatgtccaaaatgcccctgcgcatgttaacat 50069237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 3792560 - 3792635
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacat 78  Q
    ||||||||||||||||||||||   ||||||||||  |||||||||   ||||||| ||| |||| ||||||||||    
T  3792560 gaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaacat 3792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 35563532 - 35563591
Alignment:
Q  30 cgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgca 89  Q
    ||||||||| |||||||||| ||  |||| |||||||| ||||||||||||| |||||||    
T  35563532 cgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgca 35563591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 45691269 - 45691196
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaa 75  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||||||   ||||||| |||||||  |||||||    
T  45691269 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 45691411 - 45691338
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaa 75  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||||||   ||||||| |||||||  |||||||    
T  45691411 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 655
Target Start/End: Complemental strand, 51719852 - 51719234
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||| |||||||||||| ||||||| |||  |||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||    
T  51719852 gaattctgcttattacccaaatggattcgcttatttccaaagtaaataaccgaaatacccctacgtaagttaacatgcgttaatgtaaattacaacgtaa 51719753  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 202  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  51719752 cgtaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgcgtgacttaaaccacgctaggcataaaactggtac 51719653  T
Q  203 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgc 302  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||| | ||||||||||||||  |||||| |||| | |||||||||||| |||||||    
T  51719652 aaagcaagcaccaaaacagaatttaactagcg--tgagttaagtcacaccagttttaacactagcatgagttaactcacattggtgctgatgctatatgc 51719555  T
Q  303 gcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttgg 402  Q
     ||||||||||           ||| ||||||||   ||| |||||||||||||| | |  || ||||||||||||||||||||||||||||||||||||    
T  51719554 acagcagactt-----------gca-tggcagta---gcttctgccttgttccatctatccctctttagtgaatatgcaatcattcaataataattttgg 51719470  T
Q  403 tacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaat 502  Q
    ||||||||||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||    
T  51719469 tacaaccattcattggttcatcctgaactcataatttagagaacatgcagtcattcaataataattcaaaaacacaattttaacgaaaaataacgtaaat 51719370  T
Q  503 gtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag-aaatactacaagtcatataaaaaacaagtcataaaaacaagaca 601  Q
    |||||||||||||||||||||||||||                 ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  51719369 gtcataaataaggccaaccgcgcaaat-----------------aaaatgtcaagaaaatactacaagccatat-aaaaacaagtcataaaaacaagaca 51719288  T
Q  602 ttactactgctcctgtggactatgactcctagacctcctcctcggaacctgatg 655  Q
     |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51719287 ctactgctgctcctgtggactatgagtcctagacctcctcctcggaacctgatg 51719234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 364 - 556
Target Start/End: Original strand, 628452 - 628631
Alignment:
Q  364 ctgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataa 463  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||            |||||    
T  628452 ctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaacagaactcataatttagagaac-----------gaataa 628540  T
Q  464 taatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaa 556  Q
    |  |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||  ||||||||| ||||||||||    
T  628541 t--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataagcccaaccgtgcaaatgtaaaagtagtacaactaaaatgtcaa 628631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 24974221 - 24974100
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 105  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||| || |||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaattataatgtaactt 24974122  T
Q  106 aacatatgttgcgtgacttaac 127  Q
    || ||| || ||||||||||||    
T  24974121 aagataagtagcgtgacttaac 24974100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 12586876 - 12586752
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 101  Q
    ||||||| ||||||||| |||||| |||||||||||  |||| ||||| ||| ||||  ||||||| ||||||||||||| |||||||||||| ||||||    
T  12586876 ggaattcagctcattactcaaatggattcgctcatttccaaa-taaatgaccgaaatgtccctacgcatgttaacatgcgctagtgcaaattataacgta 12586778  T
Q  102 acttaacatatgttgcgtgacttaac 127  Q
    |||||| ||| || ||||||||||||    
T  12586777 acttaagataagtagcgtgacttaac 12586752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 45237411 - 45237527
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||| |||||| ||||||| |||   ||||||||||||  |||| |||||| | ||||||||||||| |||||||||||| |||||||    
T  45237411 gaattctgctcattactcaaatggattcgcttatttctaaagtaaataactgaaatgcccctatgcatgttaacatgcgctagtgcaaattataacgtaa 45237510  T
Q  103 cttaacatatgttgcgt 119  Q
    ||||| ||| |||||||    
T  45237511 cttaagatacgttgcgt 45237527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 55527991 - 55527867
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||   ||||| |||||||||||  ||||| |||| ||| |||| |||||||| ||||||||| ||| |||||||||||| |||||||    
T  55527991 gaattctgctcattatttaaatggattcgctcatttccaaagcaaatgaccgaaatgcccctacgcatgttaacacgcgctagtgcaaattataacgtaa 55527892  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| ||| || ||||||||||||    
T  55527891 cttaagataagtagcgtgacttaac 55527867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 36501940 - 36501819
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 105  Q
    |||||||||||||||| ||| |||||||||||| |||||||||| | | |||| |||||||| ||||| ||||||| | |||||||||| |||||||||     
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgcgctggtgcaaattataacgtaactc 36501841  T
Q  106 aacatatgttgcgtgacttaac 127  Q
    || ||| ||  |||||||||||    
T  36501840 aagataagtaacgtgacttaac 36501819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 33164583 - 33164504
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||  ||||||| |||||||| ||||||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgt 33164504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 446 - 555
Target Start/End: Complemental strand, 38653681 - 38653572
Alignment:
Q  446 catgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaac 545  Q
    |||||| ||||||| | |||||||||| ||||||| ||||| |||| |||   ||||||||||||||||  |||  ||||||||||||||||| ||||||    
T  38653681 catgcattcattcattcataatttagatacacaatattaacgaaaattaactaaaatgtcataaataagcgcaagtgcgcaaatgtaaatatattacaac 38653582  T
Q  546 caaaatgtca 555  Q
    ||||||||||    
T  38653581 caaaatgtca 38653572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 23283851 - 23283737
Alignment:
Q  5 attctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaact 104  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||| | | |||| | | || | ||||||||||| | |||||||||||||||| |||||    
T  23283851 attctacttattacctaaatgaattcgctcattttcaaagtaaatgatcgaaatgctcttatgcatgttaacatgtgctagtgcaaattacaacataact 23283752  T
Q  105 taacatatgttgcgt 119  Q
    ||| ||| |||||||    
T  23283751 taagatacgttgcgt 23283737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 40312869 - 40312788
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    ||||||||||||||||||||| ||||||||||  |||||||||   | ||||||| | |||||||||||||||||| |||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtg 40312788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 40322945 - 40322864
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    ||||||||||||||||||||| ||||||||||  |||||||||   | ||||||| | |||||||||||||||||| |||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtg 40322864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 36172164 - 36172244
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||||||||||   | | ||||||| |||||||||   |||||||||||||| ||||||||||||||||    
T  36172164 ggaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaacatgcgt 36172244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 618 - 652
Target Start/End: Original strand, 628706 - 628740
Alignment:
Q  618 ggactatgactcctagacctcctcctcggaacctg 652  Q
    |||||||||||||||||||||||||||||||||||    
T  628706 ggactatgactcctagacctcctcctcggaacctg 628740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 34235782 - 34235705
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgc 80  Q
    ||||| |||||||||||||||||  | |||||||||  ||||||||| ||| |||| ||| |||| ||||||||||||    
T  34235782 gaattatgctcattacccaaatggttccgctcattcctaaagtaaatgaccgaaatgcccatacgcatgttaacatgc 34235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 628088 - 628272
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||  ||     ||||| |||| |  |||||||||| |||| ||||||  || || |    
T  628088 gaattctgctcattacccaaatggtttcgctcattcctaaagtaaaagacttttttacccttacgcaacttaacatgcgctagttcaaattggaatgtga 628187  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    ||||| | | || | ||||||||| | ||| |||| ||| ||| ||| ||||||||||||||||   ||||||||  ||||||||    
T  628188 cttaagacaggtagagtgacttaagtaacgctagtgcaatatgaaacacaacttaagtcacgttacttgacttaagtcacgctag 628272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 28798223 - 28798147
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatg 79  Q
    |||||||||||||||||||||     |||||||||||||||||||||  ||||||| ||||| |  |||||||||||    
T  28798223 gaattctgctcattacccaaacagtatcgctcattctcaaagtaaatgtccaaaatgcccctgcacatgttaacatg 28798147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 40923805 - 40923737
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    |||||||| ||||| |||| |||||| |||||||| |||||||||||||  ||||||||  ||||||||    
T  40923805 tgacttaaatcacgctagtgcaaaatttaacgcaatttaagtcacgttgcttgacttaagtcacgctag 40923737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 28796620 - 28796675
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaat 58  Q
    |||||||||||||||||||||  |  |||||||||||||||||||||  |||||||    
T  28796620 gaattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtccaaaat 28796675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 33161660 - 33161707
Alignment:
Q  33 tcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgc 80  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||    
T  33161660 tcattcccaaagtaaatatccaaaatacccctgcatatgttaacatgc 33161707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 47177912 - 47177975
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctac 66  Q
    ||||||||||| | ||||||| |  ||||||| ||| |||||||||| ||||||||||||||||    
T  47177912 gaattctgctcttgacccaaacggtttcgctcgttcccaaagtaaattaccaaaatacccctac 47177975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 628255 - 628313
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaa 177  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||    
T  628255 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaa 628313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 36174649 - 36174579
Alignment:
Q  11 ctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 81  Q
    |||||||| ||||||  ||| ||||||| ||||||||| | ||||||| || ||||| |||||||||||||    
T  36174649 ctcattactcaaatggtttcactcattcccaaagtaaaaatccaaaatgccactacgcatgttaacatgcg 36174579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 38677740 - 38677667
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||| ||||||||| || || | |||||| |||||||||||  ||||||| |||| || ||||||||    
T  38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaac 38677667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 54208179 - 54208264
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    |||||| ||||| ||| |||||||  || |||||||| |||||||||| | ||||||||||||||  | |||||| | ||||||||    
T  54208179 ggaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacgttagtg 54208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 46817484 - 46817432
Alignment:
Q  29 tcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 81  Q
    ||||||||||| |||||||||   |||||| |||||||| |||||||||||||    
T  46817484 tcgctcattcttaaagtaaatgttcaaaatgcccctacgcatgttaacatgcg 46817432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 492
Target Start/End: Complemental strand, 6706107 - 6705642
Alignment:
Q  9 tgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaac 108  Q
    ||||||||| ||||||| |||||||||||  |||||||||| ||  |||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  6706107 tgctcattatccaaatggattcgctcatttccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgcaaattacaacgtatcttaac 6706008  T
Q  109 atatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtacaaagca 208  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  ||   ||       
T  6706007 atatgttgcgtgacttaactcacgctagtacaaaatgttacgcaacttaagccacgttgtgtgacttaaaccacgctaggcataaaactagttttaa--- 6705911  T
Q  209 agcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgcgcagca 308  Q
              |||||||| | ||||||  ||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||| | |||||||||| ||    
T  6705910 ----------cagaatttgagtagcgt--gagttaagtcacgctagttttaacactagcgtgagttaactcacgttggtgttgaagctatatgcgcaaca 6705823  T
Q  309 gacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggtacaac 408  Q
    || |  | || |||||||||||||||||||||||||   |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  6705822 gaatagcatggcagtggcagtggcagtagctgctgc---cttgttccatctgtccctgtttagtgaatatgcaatcattcaataataattttggtacaac 6705726  T
Q  409 cattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaa 492  Q
    ||||||||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  6705725 cattcattgattcatccataactcataatttagagatcatgcagtcattcaataataatttagaaacacaattttaacgaaaaa 6705642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 759159 - 759284
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 101  Q
    |||||||||||||||||| ||||| ||||| |||||| |||||||||| ||| |||| | | |||| ||||||||||| ||||||| |||||||||||||    
T  759159 ggaattctgctcattacctaaatggattcgatcattcccaaagtaaatgaccgaaatgctcatacgcatgttaacatgtgttagtgtaaattacaacgta 759258  T
Q  102 acttaacatatgttgcgtgacttaac 127  Q
    |||||| |||||||| ||||||||||    
T  759259 acttaagatatgttgtgtgacttaac 759284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 28677886 - 28678010
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||| ||||||| | ||||||||||  ||||||||| ||| ||||||||||||||| ||||||||||| || || |||||| |||||||    
T  28677886 gaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaacatgcgctactgaaaattataacgtaa 28677985  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| ||| || ||||||||||||    
T  28677986 cttaaaataagtagcgtgacttaac 28678010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 11135741 - 11135865
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| ||||| |||||||||||| ||||||||||  |||| ||||| ||||||||||||||||| |||||||| | || |||||||||| |||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaacttacgctagtgcaaatgacaacgtaa 11135840  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
     |||||| | ||||||||| |||||    
T  11135841 gttaacacacgttgcgtgagttaac 11135865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 34016001 - 34016118
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 101  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||| ||  |||| |||||||  ||||||||||||  |||||  ||||||||||||    
T  34016001 ggaattctgctcattacctaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaacatgcactagtgggaattacaacgta 34016100  T
Q  102 acttaacatatgttgcgt 119  Q
    |||||| ||| |||||||    
T  34016101 acttaagatacgttgcgt 34016118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17644678 - 17644606
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaa 75  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  17644678 gaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaa 17644606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 5506766 - 5506645
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 105  Q
    ||||||||||||  ||| || |||| ||||||| |||||||||| | | |||| | |||||| ||||| |||||||  ||||||||||| ||| ||||||    
T  5506766 ttctgctcattattcaactggattcactcattcccaaagtaaatgatcgaaatgctcctacgcatgttgacatgcgccagtgcaaattataacataactt 5506667  T
Q  106 aacatatgttgcgtgacttaac 127  Q
    || ||| || ||||||||||||    
T  5506666 aagataagtagcgtgacttaac 5506645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 30491869 - 30491794
Alignment:
Q  7 tctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||||||||||||||||||| |||||||||   | |||||  ||||||| |||||||| |||||    
T  30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaacttgcgt 30491794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 30489753 - 30489847
Alignment:
Q  33 tcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaac 127  Q
    |||||| |||||||||   | ||||| |||||||| ||||||||||||  ||||||| |||| |||||||||||| ||| || ||||||||||||    
T  30489753 tcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacatgctctagtgcagattataacgtaacttaaaataagtagcgtgacttaac 30489847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 34017697 - 34017619
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 81  Q
    |||||||||||||||| ||||||  | |||||||| ||||||||||| ||| ||||||||||||| | || ||||||||    
T  34017697 gaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgcaagtaaacatgcg 34017619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 6159020 - 6158948
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||||||||  ||||| |||||||||||| ||||||||||  | |||||| ||||||||||||||||    
T  6159020 gaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaata-ccctacgtatgttaac 6158948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 19402069 - 19401994
Alignment:
Q  11 ctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 86  Q
    |||||||||||||||  ||| |||||||||||||||||   ||||||| ||| |||| ||||||||||||| ||||    
T  19402069 ctcattacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaacatgcgctagt 19401994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 17636344 - 17636417
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||||||||| ||||| |||||||||||| |||| ||||| |   ||||||||||||  ||||||||    
T  17636344 gaattctgctcattacctaaatggattcgctcattcccaaaataaatgattgaaatacccctacacatgttaac 17636417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 652
Target Start/End: Complemental strand, 6705606 - 6705562
Alignment:
Q  608 ctgctcctgtggactatgactcctagacctcctcctcggaacctg 652  Q
    |||||| || |||||||||||||||||||||||||||| ||||||    
T  6705606 ctgctcatgcggactatgactcctagacctcctcctcgaaacctg 6705562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 6702370 - 6702449
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||| |||||||   |||||||||||||||||||||   | ||||| ||| |||| |||||||| |||||    
T  6702370 gaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaacttgcgt 6702449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 33144262 - 33144183
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||| ||||||||||||  |  ||||||||||  ||||||||| ||| |||| |||||||| |||||||| |||||    
T  33144262 gaattctgttcattacccaaacaatatcgctcattcctaaagtaaatgaccgaaatgcccctacgcatgttaacttgcgt 33144183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 40008712 - 40008791
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    ||||||||||||||||| |||     |||||||||||||||||||||  | ||||| ||||| || ||||||||||||||    
T  40008712 gaattctgctcattacctaaacattatcgctcattctcaaagtaaatgtctaaaatgcccctgcgcatgttaacatgcgt 40008791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 1145141 - 1145214
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||| ||||||||| |||||    ||||||||||| |||||||||| |||||||| || ||||| ||||||||    
T  1145141 gaattatgctcattatccaaacagtttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaac 1145214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 6636980 - 6636919
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 64  Q
    ||||||||||||||| ||||||||||  | |||||| |||| ||||| ||||||||| ||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccct 6636919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 7164827 - 7164754
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||| ||| |||| |||||| ||||||||||||||||| ||||| |  |||||| ||||||| || |||||    
T  7164827 gaattctactctttactcaaatggattcgctcattctcaaaataaatgattaaaatatccctacgcatattaac 7164754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 7826178 - 7826133
Alignment:
Q  31 gctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    |||||||| ||||| || | ||||||||||||||||||||||||||    
T  7826178 gctcattcccaaagaaatttaccaaaatacccctacgtatgttaac 7826133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 40266667 - 40266611
Alignment:
Q  3 gaattctgctcatt-acccaaatgaattcgctcattctcaaagtaaataaccaaaat 58  Q
    ||||||||||| || ||||||||| ||| |||||||| |||||||||| ||||||||    
T  40266667 gaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaat 40266611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 3 - 459
Target Start/End: Complemental strand, 53814639 - 53814188
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| | |||||| |||||||| ||||||| ||||| |||||||||||| |||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgcgctagtgcaaattaaaacgtaa 53814540  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 202  Q
    ||||||||| ||| |||||||||||||||  | |||||||||| ||||||||||||||||||||  |||||||||||||||||||    ||||| | |||    
T  53814539 cttaacatacgttacgtgacttaactcacactggtacaaaatggaacgcaacttaagtcacgttacgtgacttaaaccacgctagtaccaaaactgatac 53814440  T
Q  203 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgc 302  Q
    |||||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||| |||||||    
T  53814439 aaagcaagtaccaaaacagaatttgagtagcg--tgagttaagtcacgctagttttaacactaacgtgagttaactcacgttggtgctgatgctatatgc 53814342  T
Q  303 gcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttgg 402  Q
    ||| |||| || | || |||||| ||||||||||   ||| |||||||||| ||| |||  ||||||||||||||||||| |||||||||||||||||||    
T  53814341 gcatcagatttgcatggcagtggtagtggcagta---gctactgccttgtttcatctgtccctgtttagtgaatatgcaaccattcaataataattttgg 53814245  T
Q  403 tacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattca 459  Q
    |||||||||||||||||| || |||| ||||||||||||||| ||||||| ||||||    
T  53814244 tacaaccattcattgattaatccagaactcataatttagagatcatgcagccattca 53814188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 376 - 652
Target Start/End: Complemental strand, 21566743 - 21566478
Alignment:
Q  376 tatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttagaaac 475  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||  || | |||||||||||||||||||||| |||||||||||||||||| ||||    
T  21566743 tatgcattcattcaataataattcaggtacaaccattcattgattcaaccaaaactcataatttagagaacatgcattcattcaataataatttaaaaac 21566644  T
Q  476 acaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag--aaatactacaagtcat 573  Q
     | |||||||| |||| |||   |||||||||||| |         || |||||||||||||  |||||||| |||||| ||  |||||||||||         
T  21566643 gcgattttaactaaaattaactcaaatgtcataaaga--------ggcacaaatgtaaatatcatacaaccacaatgtcgagaaaaatactacaa----- 21566557  T
Q  574 ataaaaaacaagtcataaaaacaagacattactactgctcctgtggactatgactcctagacctcctcctcggaacctg 652  Q
    |||  ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  21566556 atagcaaaaaagtcataaaaacaagacattactgctgctcatgtggactatgactcctagacctcctcctcagaacctg 21566478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 83 - 652
Target Start/End: Complemental strand, 13840722 - 13840156
Alignment:
Q  83 tagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccac 182  Q
    |||||| ||||  ||||| |||||| | | || ||||||||||| ||||| |||| ||||||| |||| ||||||| |||||||   ||||||||  |||    
T  13840722 tagtgccaattggaacgtgacttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgaaacgtaacttaaatcacgttacttgacttaagtcac 13840623  T
Q  183 gctaggcataaaacaggtacaaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttgactcgcg 282  Q
    |||||   | || | |||| |||||| ||||||||||  |   | |  |||||  ||||||||||||||||||||||| ||||| | ||||| |||| ||    
T  13840622 gctagttctgaatctggtataaagcatgcaccaaaacctacaatgagcagcgt--gagttaagtcacgctagttttaagactagcgggagttaactcacg 13840525  T
Q  283 ttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaa 382  Q
     || ||||  || |||   ||| ||||||     || || |||||||||||||||||| |||  | ||||||| |   |  |||||||||||| ||||||    
T  13840524 ctgatgcttctgctatgcacgctgcagaccagactggcaatggcagtggcagtagctgttgc--ctttgttccttcattccctgtttagtgaacatgcaa 13840427  T
Q  383 tcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttagaaacacaattt 482  Q
    | |||| |||||||||||| ||||| ||||||||||||||  |||| |||||||||||||||||            ||||||  ||||||||||||||||    
T  13840426 ttattcgataataattttgatacaatcattcattgattcaaccagaactcataatttagagaacg-----------aataat--tttagaaacacaattt 13840340  T
Q  483 taacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag-aaatactac-----------aagt 570  Q
    |||  |||||||| |||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||||| | |||||||||           ||||    
T  13840339 taatgaaaaataacgtaaatgtcataaataagtccaaccgtgcaaatgtaaaagtagtacaaccaaaatgtcaggaaaatactacaaacatccaaaaagt 13840240  T
Q  571 catataaaaaacaagtcataaaaacaagac---attactactgctcctgtggactatgactcctagacctcctcctcggaacctg 652  Q
    |||| |||||||||||||| |||  |||||   | | || ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  13840239 cataaaaaaaacaagtcat-aaattaagaccctactgctgctgctcctgcggactatgactcctagacctcttccttggaacctg 13840156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 364 - 568
Target Start/End: Original strand, 39685544 - 39685736
Alignment:
Q  364 ctgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataa 463  Q
    |||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||  |||| |||||||||||||||||            |||||    
T  39685544 ctgtttagtgaacatgcaattattcgataataatttttgtacaaccattcattgattcaaccagaactcataatttagagaacg-----------aataa 39685632  T
Q  464 taatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag-aaata 562  Q
    |  |||||| ||||||||||||| ||||||||  ||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||| |||||    
T  39685633 t--tttagacacacaattttaacgaaaaataacataaatgtcataaataagcccaaccgtgcaaatgtaaaagtagtacaaccaaaatgtcaagaaaata 39685730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 3 - 274
Target Start/End: Original strand, 44430418 - 44430687
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||| |||||||  || |||||||| |||||||||  | ||   ||||| |||| |  |||||||||| |||||||||||  ||||| |    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaaagatcattttacccttacgcaacttaacatgcgctagtgcaaattggaacgtga 44430517  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 202  Q
    ||||| | | || ||| ||||||| ||||| |||| ||||||| || |||||||||||||||||   ||||||||  ||||||||   | || | |||||    
T  44430518 cttaagacaggtagcgcgacttaagtcacgctagtgcaaaatgaaatgcaacttaagtcacgttacttgacttaagtcacgctagttttgaatctggtac 44430617  T
Q  203 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagtt 274  Q
    |||||| ||||||||||  |   | | |||||  ||||||||||||||||||||||||||||||||||||||    
T  44430618 aaagcatgcaccaaaacctacaatgagtagcg--tgagttaagtcacgctagttttaacactagtgtgagtt 44430687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 15040681 - 15040805
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||  |||| |||||||| ||||||||||||  |||||||||||| ||||||     
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcactagtgcaaattataacgtag 15040780  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| |||  | ||||||||||||    
T  15040781 cttaagataaatagcgtgacttaac 15040805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 4970833 - 4970742
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtacaaagcaag 210  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  4970833 tgacttaactcacgctagtacaaaatgtaaagcaatttaagccacgttgcgtgacttaaaccacgctaggcatgaaactggtacaaagcaag 4970742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 19872219 - 19872096
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||| ||||||| ||||||||||||||||||  ||| ||||| || ||||| || ||||| ||||||||||||||||||||||| || |||||||    
T  19872219 gaattctgcccattacctaaatgaattcgctcattcctaaaataaatgactaaaatgcctctacgcatgttaacatgcgttagtgcaaactataacgtaa 19872120  T
Q  103 cttaacatatgttgcgtgacttaa 126  Q
    ||||| ||| || |||||||||||    
T  19872119 cttaagataagtagcgtgacttaa 19872096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 7665739 - 7665857
Alignment:
Q  9 tgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaac 108  Q
    |||||||| |||||||| |||||||||||| |||||||||| ||| |||| ||| || | ||||||||||||| |||||||||||| ||||||||||||     
T  7665739 tgctcatttcccaaatggattcgctcattcgcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaattataacgtaacttaag 7665838  T
Q  109 atatgttgcgtgacttaac 127  Q
    ||| || ||||||||||||    
T  7665839 ataagtagcgtgacttaac 7665857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 34082845 - 34082963
Alignment:
Q  9 tgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaac 108  Q
    |||||||| ||||||||||||||||||||  |||||||||| | |||||| | |||||| ||||||||||||| | || ||||||| ||| ||||||||     
T  34082845 tgctcattgcccaaatgaattcgctcatttccaaagtaaatgatcaaaatgctcctacgcatgttaacatgcgctggtacaaattataacataacttaag 34082944  T
Q  109 atatgttgcgtgacttaac 127  Q
    ||| || ||||||||||||    
T  34082945 ataagtagcgtgacttaac 34082963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 50663875 - 50663948
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||| | |||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  50663875 gaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaac 50663948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 6162760 - 6162681
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||   ||||||| |||||||| ||||||||||||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 6162681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 35069304 - 35069249
Alignment:
Q  64 tacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgt 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  35069304 tacgtatgttaacatgcgctagtgcaaattacaacgtaacttaagatacgttgcgt 35069249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 42947375 - 42947458
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 86  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||   ||||||| | |||||| ||||||||||||| ||||    
T  42947375 gaattctgctcattacctaaatgatttcactcattctcaaagtaaaagtccaaaatgctcctacgcatgttaacatgcgctagt 42947458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 39645774 - 39645878
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||| |||||||| | ||||| ||||| |||||| |||||||||| | | ||||   |||||| ||||||||||||| |||||||||||| || ||||    
T  39645774 gaattccgctcattatctaaatggattcgttcattcgcaaagtaaatgatcgaaatgttcctacgcatgttaacatgcgctagtgcaaattataatgtaa 39645873  T
Q  103 cttaa 107  Q
    |||||    
T  39645874 cttaa 39645878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 53827739 - 53827660
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    ||||||||||||||||| ||||    |||||||||| ||||||||||  ||||||| |||||||| ||||||||||||||    
T  53827739 gaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgt 53827660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 54529034 - 54528961
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||| ||||| |||||| || |||||||||||| ||||||  |||||||||||||||  ||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaac 54528961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 3860615 - 3860659
Alignment:
Q  367 tttagtgaatatgcaatcattcaataataattttggtacaaccat 411  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||    
T  3860615 tttagtgaacatgcaattattcaataataattttggtacaaccat 3860659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 4969875 - 4969953
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 81  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||   | |||||||||||||||  |||||| ||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacgtgagttaacttgcg 4969953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 39685307 - 39685462
Alignment:
Q  117 cgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtacaaagcaagcaccaa 216  Q
    |||||||||| ||||| | || ||||||| |||| |||||||||||||||   ||||||||  ||||||||   | || | |||| |||||| |||||||    
T  39685307 cgtgacttaagtcacgctggtgcaaaatgaaacgaaacttaagtcacgttacttgacttaagtcacgctagttctgaatctggtagaaagcatgcaccaa 39685406  T
Q  217 aacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagtt 274  Q
    |||  |   | |  |||||  ||||||||||||||||||||||||||||| |||||||    
T  39685407 aacctacaatgaacagcgt--gagttaagtcacgctagttttaacactagggtgagtt 39685462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 4971232 - 4971184
Alignment:
Q  63 ctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacata 111  Q
    ||||| ||||||||||||  ||||||||||||||| |||||||||||||    
T  4971232 ctacgcatgttaacatgcactagtgcaaattacaaagtaacttaacata 4971184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  4 aattctgctcattacccaaatgaattcgctcattctcaaagtaaa 48  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 15042085 - 15042005
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    ||||||||||||||||||||||  |  |||||||||| |||||||||   | ||||| |||||||| |||||||| |||||    
T  15042085 ggaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgt 15042005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 39685212 - 39685316
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| |||||||||||||||||  |||||||||| ||||||||||  ||||   ||||| |||| |  |||||| ||| |||||||||||  ||||| |    
T  39685212 gaattttgctcattacccaaatggtttcgctcattttcaaagtaaaagaccattttacccttacgcaacttaacacgcgctagtgcaaattggaacgtga 39685311  T
Q  103 cttaa 107  Q
    |||||    
T  39685312 cttaa 39685316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 40517601 - 40517537
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacg 67  Q
    ||||||||||| ||||||||| |  |||||||||||  ||||||||| ||||| |||||||||||    
T  40517601 gaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgaccaagatacccctacg 40517537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 651
Target Start/End: Original strand, 39685789 - 39685832
Alignment:
Q  608 ctgctcctgtggactatgactcctagacctcctcctcggaacct 651  Q
    ||||||||| || |||||||||||||||||||||||||| ||||    
T  39685789 ctgctcctgcgggctatgactcctagacctcctcctcggtacct 39685832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 42381615 - 42381694
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    ||||||||||||||||| |||  |  |||||||||  ||||||||||  ||||||| ||| |||| ||||||||||||||    
T  42381615 gaattctgctcattacctaaacaacatcgctcatttccaaagtaaatgtccaaaatgcccttacgcatgttaacatgcgt 42381694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 8150168 - 8150242
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    |||||| || || ||||||||| |  || |||||||| ||||| || | ||||||||||||||||||||||||||    
T  8150168 ggaattatgatctttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaac 8150242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 21566907 - 21566861
Alignment:
Q  241 ttaagtcacgctagttttaacactagtgtgagttgactcgcgttggt 287  Q
    ||||||||||||||| |||||||||| ||||||| |||| |||||||    
T  21566907 ttaagtcacgctagtgttaacactagcgtgagttaactcacgttggt 21566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 42993592 - 42993650
Alignment:
Q  29 tcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    |||||||||| ||||||||||  || |||| ||||| |||||||||||||||| |||||    
T  42993592 tcgctcattcccaaagtaaatttcctaaatgcccctgcgtatgttaacatgcgctagtg 42993650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 54525802 - 54525916
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| ||||| ||||| ||||  |||||||||||  |||||||||| ||  ||||| ||||| |||| |||||   || |||||||||||| || ||||    
T  54525802 gaattatgctctttacctaaattgattcgctcatttccaaagtaaatgactgaaatatccctatgtatattaactcacgctagtgcaaattataatgtaa 54525901  T
Q  103 cttaacatatgttgc 117  Q
     |||||||| |||||    
T  54525902 gttaacatacgttgc 54525916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 30533928 - 30533883
Alignment:
Q  31 gctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||| |||||||||||| |||||||||||||||  ||||||||    
T  30533928 gctcattttcaaagtaaatatccaaaatacccctacacatgttaac 30533883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 47064864 - 47064937
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||| |||||||||||||||||| |  |||||||| |||||||||   ||||||| | |||||| ||||||||    
T  47064864 gaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaac 47064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 555
Target Start/End: Original strand, 11423261 - 11423317
Alignment:
Q  499 aaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtca 555  Q
    ||||||||||||| ||  ||| | |||||||||||||||| |||||| |||||||||    
T  11423261 aaatgtcataaattagcgcaaacacgcaaatgtaaatatattacaacaaaaatgtca 11423317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 42951066 - 42950990
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatg 79  Q
    |||||||||||||||| |||||   | ||||||||| ||||||||||  ||| | | ||| ||||||||||||||||    
T  42951066 gaattctgctcattactcaaatacttccgctcattcccaaagtaaatgtccatattgcccatacgtatgttaacatg 42950990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 53824291 - 53824374
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    |||||||||| |||||||||||| | | |||||||| |||||||||| ||  |||| ||| | || ||||||||||||| |||||    
T  53824291 gaattctgcttattacccaaatggaat-gctcattcccaaagtaaatgactgaaatgcccatgcgcatgttaacatgcgctagtg 53824374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 302
Target Start/End: Complemental strand, 17436619 - 17436322
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||| ||| ||||  ||||||  ||||||||||||| ||||||||||||||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaacatgcgctagtgcaaattacaacgtaa 17436520  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 202  Q
    ||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  17436519 cttaagatgcgttgcgtgacttaactcacgctagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccatgctaggcataaaactggtac 17436420  T
Q  203 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgc 302  Q
    |||||||| || |||||| ||||| | |||||  |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||    
T  17436419 aaagcaagtacgaaaacaaaatttgagtagcg--tgagttaagtcacgctagttttaacactagcgtgagttaactcacgttggtgctgatgctatatgc 17436322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 375 - 529
Target Start/End: Complemental strand, 17436327 - 17436173
Alignment:
Q  375 atatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataataatttagaaa 474  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17436327 atatgcaattattcaataataattttggtacaaccattcatttattcatctagaactcataatttagagaacatgcagtcattcaataataatttagaaa 17436228  T
Q  475 cacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaat 529  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  17436227 cacaattttaacgtaaaataatgtaaatgtcataaataaggccaaccgcgcaaat 17436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 556
Target Start/End: Complemental strand, 25403853 - 25403549
Alignment:
Q  237 tgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagta 336  Q
    |||||||||||||||||||||||||||||| ||||||| |||| || |||||||  |  |||   ||| ||||||     || || ||||||||||||||    
T  25403853 tgagttaagtcacgctagttttaacactagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcattggcagtggcagta 25403754  T
Q  337 gctgctgctgccttgttccatttgttact-gtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcata 435  Q
    ||||||||  | ||||||| ||  || || |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||   ||| ||||||    
T  25403753 gctgctgc--ctttgttcc-ttcattccttgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaactagaactcata 25403657  T
Q  436 atttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaat 535  Q
    |||||||||||            ||||||  |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||     
T  25403656 atttagagaacg-----------aataat--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataagcccaaccgtgcaaatgtaaaa 25403570  T
Q  536 atagtacaaccaaaatgtcaa 556  Q
     ||||||||| ||||||||||    
T  25403569 gtagtacaactaaaatgtcaa 25403549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 32274184 - 32274298
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||| | | |||| |||||||| ||||||||||||| |||||||||||| ||| |||    
T  32274184 gaattatgctcattgcccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaattagaacataa 32274283  T
Q  103 cttaacatatgttgc 117  Q
    ||||| |||||||||    
T  32274284 cttaagatatgttgc 32274298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 14153354 - 14153438
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    |||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgctagtg 14153438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 31483681 - 31483752
Alignment:
Q  41 aaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacatat 112  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  31483681 aaagtaaataatcaaaatgcccctacgcatgttaacatgcgctagtgcaaattacaacgtaacttaagatat 31483752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 35060973 - 35060894
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||||||||||| | ||||||||  ||||||||||  ||||||| |||||||| ||||||||||||||    
T  35060973 gaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgt 35060894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 12703815 - 12703948
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||| ||||||||| ||||||| |||| |||| | | ||||||||| | | |||| ||| |||||||  ||||||||| |||||||||||| |||||||    
T  12703815 gaattatgctcattatccaaatggattctctcaattttaaagtaaatgatcgaaatgccc-tacgtatactaacatgcgctagtgcaaattataacgtaa 12703913  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagt 137  Q
    |||||  || ||||||| | ||||| |||||||||    
T  12703914 cttaagctacgttgcgtaagttaacacacgttagt 12703948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 31522613 - 31522532
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtta 84  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||| ||| |||| |||||||| | |||||| |||||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcgtta 31522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 24326943 - 24327084
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 101  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||| ||     ||||| ||| |   ||||| |||||||||||||| | | ||||     
T  24326943 ggaattctgctcattactcaaatgaattcgctcattcccaaaataaatgacatttttacccttacttgacttaacttgcgttagtgcaaaatgctacgtg 24327042  T
Q  102 acttaacatatgttgcgtgacttaactcacgttagtacaaaa 143  Q
    |||||| | |  | | ||||||||||||||| ||||||||||    
T  24327043 acttaagacaaatagtgtgacttaactcacgctagtacaaaa 24327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 4321815 - 4321735
Alignment:
Q  4 aattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtta 84  Q
    |||||||||||||||| ||||   |||||||||| ||||||||||| | |||||| || ||||| | ||||||||||||||    
T  4321815 aattctgctcattacctaaatagtttcgctcattttcaaagtaaatgatcaaaatgcctctacgcaagttaacatgcgtta 4321735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 549
Target Start/End: Complemental strand, 34131664 - 34131515
Alignment:
Q  404 acaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataat----aatttagaaacacaattttaacaaaaaataatgta 499  Q
    |||||||||||||  ||||  || | ||||||||||| |||||||||| ||||||| | ||    |||||||||||||||||||||| |||| |||   |    
T  34131664 acaaccattcattctttcaaccaaaactcataatttaaagaacatgcattcattcattcattcataatttagaaacacaattttaacgaaaattaactca 34131565  T
Q  500 aatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaa 549  Q
    ||||||||||| | |  |||||| ||||| |||||| || |||| |||||    
T  34131564 aatgtcataaagaggcgcaaccgtgcaaaagtaaatgtattacatccaaa 34131515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 4319101 - 4319188
Alignment:
Q  20 caaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaa 107  Q
    |||||| ||| |||||||   ||||||||| | | |||| |||||||| ||||||||||||  |||||||||||| ||||||||||||    
T  4319101 caaatggatttgctcattactaaagtaaatgatcgaaatgcccctacgcatgttaacatgcactagtgcaaattagaacgtaacttaa 4319188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 806545 - 806618
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||| |||||||||    || |||||||||||||||||||  | ||||||| |||||||||||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaac 806618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 25403481 - 25403440
Alignment:
Q  611 ctcctgtggactatgactcctagacctcctcctcggaacctg 652  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  25403481 ctcctgcggactatgactcctatacctcctcctcggaacctg 25403440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 25403969 - 25403901
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||  ||||||||    
T  25403969 tgacttaagtcacgctagttcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctag 25403901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7204013 - 7203956
Alignment:
Q  19 ccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    |||||||| || |||| ||| |||||||||| | ||||||||||||||| ||||||||    
T  7204013 ccaaatgattttgctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaac 7203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 323 - 556
Target Start/End: Complemental strand, 2587 - 2369
Alignment:
Q  323 tggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattca 422  Q
    ||||||||||||||||||||||  | ||||||| |   |  ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2587 tggcagtggcagtagctgctgc--ctttgttccttcattccctgtttagtaaacatgcaattattcaataataattttggtacaaccattcattgattca 2490  T
Q  423 ttcagatctcataatttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccg 522  Q
      |||| |||||||||||||||||            ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  2489 accagaactcataatttagagaacg-----------aataat--tttagaaacacaattttaacgaaaaataatgtaaatgtcataaataagcccaaccg 2403  T
Q  523 cgcaaatgtaaatatagtacaaccaaaatgtcaa 556  Q
     |||||||||||  ||||||||| ||||||||||    
T  2402 tgcaaatgtaaaattagtacaactaaaatgtcaa 2369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 2931 - 2747
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||  |||    ||||| || | |  |||||||||| |||||||||||  ||  | |    
T  2931 gaattctgctcattacccaaatggtttcgctcattctcaaaataaaagacctttttacccttatgcaacttaacatgcgctagtgcaaattggaaaatga 2832  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    ||||| | | || || |||||||| ||||| |||| ||| | | ||||||||||||| ||||||   ||||||||  ||||||||    
T  2831 cttaagacaggtagcatgacttaagtcacgctagtgcaataagaaacgcaacttaagccacgttacttgacttaagtcacgctag 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 608 - 652
Target Start/End: Complemental strand, 2303 - 2259
Alignment:
Q  608 ctgctcctgtggactatgactcctagacctcctcctcggaacctg 652  Q
    ||||||||| |||| ||||| ||||||| ||||||||||||||||    
T  2303 ctgctcctgcggacaatgacccctagacttcctcctcggaacctg 2259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 365 - 652
Target Start/End: Original strand, 23829 - 24116
Alignment:
Q  365 tgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataat 464  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||| |  ||||||||||||||            ||||||    
T  23829 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaacgaataatttagagaacg-----------aataat 23917  T
Q  465 aatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag-aaatac 563  Q
      |||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |||||||||||  ||||||||||||||||||||| ||||||    
T  23918 --tttagaaacacaattttaacgaaaaataacgtaaatatcataaataagcccaaccgtgcaaatgtaaaagtagtacaaccaaaatgtcaagaaaatac 24015  T
Q  564 tac-----------aagtcatataaaaaacaagtcataaaaacaagac---attactactgctcctgtggactatgactcctagacctcctcctcggaac 649  Q
    |||           |||||||| |||||| ||||||| |||  |||||   | |||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  24016 tacaaacatccaaaaagtcata-aaaaaaaaagtcat-aaactaagaccctactactgctgctcctgcggactatgactcctatacctcctcctcggaac 24113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 23487 - 23671
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||  ||||||  || ||||||||||||||||||  |||    ||||| |||  |  |||||||||| |||||||||||  ||||| |    
T  23487 gaattctgctcattattcaaatggttttgctcattctcaaagtaaaagacctttttacccttacacaacttaacatgcgctagtgcaaattggaacgtga 23586  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    ||||| | | || |||| |||||| ||||| |||| ||||||  || |||||||||||||||||   ||||||||  ||||||||    
T  23587 cttaagacaggtagcgtcacttaagtcacgctagtgcaaaattaaatgcaacttaagtcacgttatttgacttaagtcacgctag 23671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 23719 - 23772
Alignment:
Q  237 tgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgct 290  Q
    ||||||||||||||||||||||||||| ||  |||||| |||| || |||||||    
T  23719 tgagttaagtcacgctagttttaacacgagcttgagttaactcacgctggtgct 23772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 568
Target Start/End: Original strand, 41798906 - 41799098
Alignment:
Q  364 ctgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataa 463  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||| |  ||||||||||||||            |||||    
T  41798906 ctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaacagaacgaataatttagagaacg-----------aataa 41798994  T
Q  464 taatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaatatagtacaaccaaaatgtcaag-aaata 562  Q
    |  |||||||||||||||||||| |||||||| |||||||||||||||||| ||||| | |||||||||||  ||||||||||||||||||||| |||||    
T  41798995 t--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataagcccaactgtgcaaatgtaaaagtagtacaaccaaaatgtcaagaaaata 41799092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 5247 - 5126
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 105  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||| ||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaactt 5148  T
Q  106 aacatatgttgcgtgacttaac 127  Q
    || ||| |  ||||||||||||    
T  5147 aagataagcagcgtgacttaac 5126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 19365474 - 19365357
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 101  Q
    |||||||||||||||||| ||||| |||||||||||| ||||  |||| ||| ||||||||||||| || |||||||||| |||||||||||| ||||||    
T  19365474 ggaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaatacccctacgcattttaacatgcgctagtgcaaattagaacgta 19365375  T
Q  102 acttaacatatgttgcgt 119  Q
    | |||| |||||||||||    
T  19365374 atttaagatatgttgcgt 19365357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 513
Target Start/End: Original strand, 44552418 - 44552554
Alignment:
Q  364 ctgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcataatttagagaacatgcagtcattcaataa 463  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||| |  ||||||||||||||            |||||    
T  44552418 ctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaacgaataatttagagaac-----------gaataa 44552506  T
Q  464 taatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataa 513  Q
    |  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  44552507 t--tttagaaacacaattttaacgaaaaataatgtaaatgtcataaataa 44552554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 38386178 - 38386295
Alignment:
Q  7 tctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactta 106  Q
    ||||||||||| ||||||| |||||||||||  |||||||||| |   |||| |||||||| ||||||||||||| |||||||||||| |||||||||||    
T  38386178 tctgctcattatccaaatggattcgctcatttccaaagtaaatgattgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaactta 38386277  T
Q  107 acatatgttgcgtgactt 124  Q
    | ||| || |||||||||    
T  38386278 agataagtagcgtgactt 38386295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 5061806 - 5061671
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||||||||| |||| ||||||  |||| ||||| | | ||||  |  |||| ||||||||||| | || |||||||||||||||||    
T  5061806 gaattctgctcattacccaaatggattcactcatttccaaaataaatgaacgaaatgtcgttacgcatgttaacatgtgctaatgcaaattacaacgtaa 5061707  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtac 139  Q
    |||||||||| | ||||||||||||||||| ||||||    
T  5061706 cttaacatat-tcgcgtgacttaactcacgctagtac 5061671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 44552026 - 44552189
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||| |||||||  |||||||||||| ||| ||||  |||    || || |||| |  |||||||||| |||||||||||  ||||| |    
T  44552026 gaattctgctcattatccaaatggtttcgctcattcttaaaataaaagacctttttatccttacgcaacttaacatgcgctagtgcaaattgaaacgtga 44552125  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgtt 166  Q
    ||||| | | || ||||||||||| ||||| || | ||| ||| ||||||||||||||||||||    
T  44552126 cttaagacaggtagcgtgacttaagtcacgctaatgcaatatgaaacgcaacttaagtcacgtt 44552189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 28138759 - 28138820
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 64  Q
    ||||||||||| |||||||||||| || |||||||| |||||||||| ||||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 38790884 - 38790962
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctc-aaagtaaataaccaaaatacccctacgtatgttaacatgc 80  Q
    ||||||||||||||| |||||||  |||||||||| || ||||||||   |||||||||||||||| ||||||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaacatgc 38790962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 26009369 - 26009442
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||| ||||||||| || || |||||||| |||||||||| |||||||||  |||||| ||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaac 26009442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 38047649 - 38047770
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 105  Q
    ||||||| |||| | ||||  ||||||| ||| | ||| ||||| | ||||||  | ||||| ||||||||||||| |||| ||||||| ||||||||||    
T  38047649 ttctgcttattatctaaatagattcgcttatttttaaaataaatgatcaaaatgtctctacgcatgttaacatgcgctagtacaaattataacgtaactt 38047748  T
Q  106 aacatatgttgcgtgacttaac 127  Q
    || ||| || ||||||||||||    
T  38047749 aagataagtagcgtgacttaac 38047770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 31823589 - 31823669
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtt 83  Q
    |||||||||||||||||||||  |  |||||||||| |||| |||||| ||||||| ||||| |  |||||||||||||||    
T  31823589 gaattctgctcattacccaaacaatatcgctcattcccaaaataaatatccaaaatgcccctgcacatgttaacatgcgtt 31823669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 652
Target Start/End: Original strand, 41799150 - 41799194
Alignment:
Q  608 ctgctcctgtggactatgactcctagacctcctcctcggaacctg 652  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  41799150 ctgctcttgcggactatgactcctagacctcctcctcggaacctg 41799194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 33839520 - 33839474
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaat 49  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  33839520 gaattctgctctttatccaaatggattcgctcattctcaaagtaaat 33839474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 26012031 - 26011958
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    ||||||||||| ||||||||| || ||   ||||||||||||||||| ||||||||||| ||| | ||||||||    
T  26012031 gaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaac 26011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 1537324 - 1537240
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    |||||||||||||||||||||     ||| |||||||||||||||||   |||||| ||||| || ||||||||||||| |||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcgctagtg 1537240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 44552781 - 44552701
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    ||||||||||||||||||||||  |  ||||||||||||||||||||   | ||||| | |||||| |||||||| |||||    
T  44552781 ggaattctgctcattacccaaacaatatcgctcattctcaaagtaaaagtcgaaaatgctcctacgcatgttaacttgcgt 44552701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 41798791 - 41798829
Alignment:
Q  241 ttaagtcacgctagttttaacactagtgtgagttgactc 279  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  41798791 ttaagtcacgctagttttaacactagcgtgagttaactc 41798829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 28139513 - 28139452
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 64  Q
    ||||||||||  ||||||||||| ||| || ||||| |||||||||| |||||||| |||||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccct 28139452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 44552309 - 44552362
Alignment:
Q  237 tgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgct 290  Q
    ||||||||||||| ||||||||||||| || ||||||| |||| || |||||||    
T  44552309 tgagttaagtcacactagttttaacacgagcgtgagttaactcacgatggtgct 44552362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 44552195 - 44552251
Alignment:
Q  121 acttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaa 177  Q
    |||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||    
T  44552195 acttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaa 44552251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 8273244 - 8273358
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 101  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||| |||||||| ||||||||||||||| |||||||||||||||||    
T  8273244 ggaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgtttgtgcaaattacaacgta 8273343  T
Q  102 acttaacatatgttg 116  Q
    |||||| ||||||||    
T  8273344 acttaagatatgttg 8273358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 568
Target Start/End: Complemental strand, 943090 - 942773
Alignment:
Q  237 tgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagta 336  Q
    ||||||||||||||||||||||||||| || ||||||| ||||  | |||||||  || |||   ||| | ||||     ||  ||||||||||||||||    
T  943090 tgagttaagtcacgctagttttaacacgagcgtgagttaactcaagctggtgcttctgctatgcacgctgtagaccagactggtagtggcagtggcagta 942991  T
Q  337 gctgctgctgccttgttccatttgttac-tgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattcattcagatctcata 435  Q
    ||||||||  | ||||||| ||  || | ||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||  |||| |  |||    
T  942990 gctgctgc--ctttgttcc-ttcattccttgtttagtgaacatgcaattattcaataataattttggtaaaatcattcattgattcaaccagaacgaata 942894  T
Q  436 atttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaatgtaaat 535  Q
    |||||||||||            ||||||  |||||||||||| ||||||  |||||||| |||||||||||||||||| ||||||| |||||||||||     
T  942893 atttagagaac-----------gaataat--tttagaaacacatttttaatgaaaaataacgtaaatgtcataaataagcccaaccgtgcaaatgtaaaa 942807  T
Q  536 atagtacaaccaaaatgtcaag-aaatactacaa 568  Q
     ||||||||||| ||||||||| |||||||||||    
T  942806 gtagtacaaccataatgtcaagaaaatactacaa 942773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 12967270 - 12967349
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaata-accaaaatacccctacgtatgttaacatgcg 81  Q
    ||||||||||||||||| |||||  | ||||||||||||||||||| |  |||||||||||||||| |||||||||||||    
T  12967270 gaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaacatgcg 12967349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 22788064 - 22787998
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgt 68  Q
    |||||||||||| ||||||||||| ||| | |||||| |||||||||| ||||||||||||||||||    
T  22788064 ggaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacgt 22787998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 22727662 - 22727751
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaat 92  Q
    |||| |||||| ||||||||||  ||| ||| |||| |||||||||| ||| ||||||||||||||  ||||||||||| ||||||||||    
T  22727662 gaatcctgctctttacccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaacatgcgctagtgcaaat 22727751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 11712961 - 11713041
Alignment:
Q  6 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 86  Q
    |||||||||||||| | |||  ||||||||||| |||||||||   ||||||| |||||||||||||||||||||| ||||    
T  11712961 ttctgctcattacctagatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgctagt 11713041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 24929140 - 24929087
Alignment:
Q  237 tgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgct 290  Q
    |||||||||||||||||||||||||||||| ||||||| |||| || |||||||    
T  24929140 tgagttaagtcacgctagttttaacactagcgtgagttaactcacgctggtgct 24929087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 25678962 - 25678782
Alignment:
Q  7 tctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactta 106  Q
    ||||||||||||| |||||  |||||| |||| |||||||||  |||    ||||| |||  |  |||||||||| | |||||||||  ||||| |||||    
T  25678962 tctgctcattaccaaaatggtttcgctgattcccaaagtaaaagacctttttacccttacacaacttaacatgcgcttgtgcaaattggaacgtgactta 25678863  T
Q  107 acatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    | | |||| ||||||||||| ||||| |||| ||| ||| ||| |||||||||| |||||   ||||||||  ||||||||    
T  25678862 agacatgtagcgtgacttaagtcacgctagtgcaatatgaaacacaacttaagttacgttacttgacttaagtcacgctag 25678782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 943252 - 943138
Alignment:
Q  72 ttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtg 171  Q
    |||||||||| | |||||||||  ||||| |||||| | | || ||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||   ||    
T  943252 ttaacatgcgct-gtgcaaattggaacgtgacttaagacaggtagcgtgacttaagtcacgctagtgcaatatgaaacgcaacttaagtcacgttacttg 943154  T
Q  172 acttaaaccacgctag 187  Q
    ||||||  ||||||||    
T  943153 acttaagtcacgctag 943138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 11573633 - 11573712
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||||||||  |  |||||||||| |||||||||   | ||||| ||||||||||||||||| |||||    
T  11573633 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcaaaaatgcccctacgtatgttaacttgcgt 11573712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 18387241 - 18387320
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 82  Q
    |||||||||||||||| ||||||  |  |||||||| ||||||||||| | ||||| ||| |||| ||||||||||||||    
T  18387241 gaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaacatgcgt 18387320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 25389928 - 25389873
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaat 58  Q
    ||||||||||| |||| |||||| ||| ||||||||||||||||||| ||||||||    
T  25389928 gaattctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaat 25389873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 20685006 - 20685051
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaa 48  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaa 20685051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 37893086 - 37893013
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||   ||||||| |||||| | ||||||||    
T  37893086 gaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaac 37893013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 649
Target Start/End: Complemental strand, 942709 - 942669
Alignment:
Q  609 tgctcctgtggactatgactcctagacctcctcctcggaac 649  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  942709 tgctcctgcagactatgactcctagacctcctcctcggaac 942669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 24929059 - 24928982
Alignment:
Q  324 ggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggt 403  Q
    |||||||||||||||||||||  | ||||||| |   |  |||||||||||| ||||||| |||||||||||||||||||    
T  24929059 ggcagtggcagtagctgctgc--ctttgttccttcattccctgtttagtgaacatgcaattattcaataataattttggt 24928982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 25678635 - 25678596
Alignment:
Q  364 ctgtttagtgaatatgcaatcattcaataataattttggt 403  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  25678635 ctgtttagtgaacatgcaattattcaataataattttggt 25678596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 24929244 - 24929186
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaa 177  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||    
T  24929244 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaa 24929186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 2154261 - 2154346
Alignment:
Q  2 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    ||||||||||||||||||||||  |  |||||||||| |||||||||  | ||||||  ||||||| |  ||||||||| ||||||    
T  2154261 ggaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagatcaaaatgtccctacgcaacttaacatgcattagtg 2154346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 18395048 - 18394964
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    |||||||||||||||||||||  |  |||||||||| |||||||| |  ||||||| || ||  | ||||||||||||| |||||    
T  18395048 gaattctgctcattacccaaacaatatcgctcattcccaaagtaattgtccaaaatgcctctgtgcatgttaacatgcgctagtg 18394964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 22496154 - 22496070
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 87  Q
    ||||| ||||||||||| ||||    ||||||||| |||||||||||  | ||||| ||| |||| ||||||||||||| |||||    
T  22496154 gaattatgctcattacctaaatagtatcgctcattttcaaagtaaatgtctaaaatgcccttacgcatgttaacatgcgatagtg 22496070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 25678799 - 25678751
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttg 167  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||    
T  25678799 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttg 25678751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 323 - 543
Target Start/End: Complemental strand, 9387639 - 9387434
Alignment:
Q  323 tggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggtacaaccattcattgattca 422  Q
    ||||||||||||||| ||||||  | ||||||| |   || |||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  9387639 tggcagtggcagtagttgctgc--ctttgttccttcatttcctgtttagtgaacatgcaattattcaataataattttggtacaaccattaattgattca 9387542  T
Q  423 ttcagatctcataatttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccg 522  Q
      |||| |||||||||||||||||            ||||||  |||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||    
T  9387541 accagaactcataatttagagaac-----------gaataat--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataagcccaatcg 9387455  T
Q  523 cgcaaatgtaaatatagtaca 543  Q
     |||||||||||  |||||||    
T  9387454 tgcaaatgtaaaagtagtaca 9387434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 5967315 - 5967191
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| | | |||| |||||||| ||||||||||||| |||||||||||| |||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaa 5967216  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| ||| || | ||||||||||    
T  5967215 cttaagataagtagtgtgacttaac 5967191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 34279639 - 34279515
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    ||||||||||||||||  ||||| ||||||||||||  ||||||||| | | |||| |||||||  |||||||||||||||||||||||||| |||||||    
T  34279639 gaattctgctcattacttaaatggattcgctcattcctaaagtaaatgatcgaaatgcccctacacatgttaacatgcgttagtgcaaattataacgtaa 34279540  T
Q  103 cttaacatatgttgcgtgacttaac 127  Q
    ||||| ||| || ||||||||||||    
T  34279539 cttaagataagtagcgtgacttaac 34279515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 9418587 - 9418803
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||  ||||   ||||| |||| |  ||||||||||  ||||||||||  ||||| |    
T  9418587 gaattctgctcattacccaaatggtttcgctcattcccaaagtaaaagaccattttacccttacgcaacttaacatgcgcaagtgcaaattggaacgtga 9418686  T
Q  103 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 202  Q
    ||||| | | || ||||||||||| ||||| |||| |||||||  ||||||||||||||| |||   ||||||||  |||||| |   |||| | |||||    
T  9418687 cttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgacacgcaacttaagtcatgttacttgacttaagtcacgctggttctaaatctggtac 9418786  T
Q  203 aaagcaagcaccaaaac 219  Q
    |||||| ||||||||||    
T  9418787 aaagcatgcaccaaaac 9418803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 31762241 - 31762357
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 102  Q
    |||||||||||||||  |||||| |||||||||||| |||||||||||| | ||||| ||||| | ||||||||||||  ||||||||||||  ||||||    
T  31762241 gaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaacatgcactagtgcaaattattacgtaa 31762340  T
Q  103 cttaacatatgttgcgt 119  Q
     | || ||| |||||||    
T  31762341 ttaaagatacgttgcgt 31762357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 33220865 - 33220782
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 86  Q
    |||||||||||||||||||||||  ||| ||||||| |||||||||    |||||| |||||||| ||||||||||||||||||    
T  33220865 gaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgcgttagt 33220782  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 9387939 - 9387824
Alignment:
Q  72 ttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtg 171  Q
    ||||||||||||||||||||||  ||||| |||||| | | || || |||||||| ||||| |||| ||| ||| || |||||||||||||||||   ||    
T  9387939 ttaacatgcgttagtgcaaattggaacgtgacttaagacaggtagcatgacttaagtcacgctagtgcaatatgaaatgcaacttaagtcacgttacttg 9387840  T
Q  172 acttaaaccacgctag 187  Q
    ||||||  ||||||||    
T  9387839 acttaagtcacgctag 9387824  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 3588623 - 3588562
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 64  Q
    ||||||| ||| ||||||||||||||| |||||||| |||| ||||| |||||||| |||||    
T  3588623 gaattctactctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccct 3588562  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 43641051 - 43640978
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 76  Q
    |||||||||||||||||||||||  || |||||||  |||||||||| | |||| | |||||||| ||||||||    
T  43641051 gaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaac 43640978  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 9387841 - 9387773
Alignment:
Q  119 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 187  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||  ||||||||    
T  9387841 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctag 9387773  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 3588340 - 3588402
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaataccccta 65  Q
    ||||||||||| ||| |||| || ||| | ||||||||||||||||| ||||||||| |||||    
T  3588340 gaattctgctctttatccaattggatttgatcattctcaaagtaaatgaccaaaataacccta 3588402  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 9387725 - 9387672
Alignment:
Q  237 tgagttaagtcacgctagttttaacactagtgtgagttgactcgcgttggtgct 290  Q
    ||||||||||||||||||| ||||||||||  |||||| |||| || |||||||    
T  9387725 tgagttaagtcacgctagtcttaacactagcatgagttaactcacgctggtgct 9387672  T

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Target: scaffold0262 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 430 - 553
Target Start/End: Original strand, 8617 - 8739
Alignment:
Q  430 ctcataatttagagaacatgcagtcattcaataataatttagaaacacaattttaacaaaaaataatgtaaatgtcataaataaggccaaccgcgcaaat 529  Q
    |||||||||||||  ||||||| ||||||| | |||||||||||||||||| ||| | |||| ||| ||||||||||||||||||  ||||||| |||||    
T  8617 ctcataatttagaacacatgcattcattcattcataatttagaaacacaatattaccgaaaa-taacgtaaatgtcataaataagtgcaaccgcacaaat 8715  T
Q  530 gtaaatatagtacaaccaaaatgt 553  Q
    ||||||||||||||||||||||||    
T  8716 gtaaatatagtacaaccaaaatgt 8739  T

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Target: scaffold1063 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 1475 - 1556
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtta 84  Q
    |||||||||||||||||||||||  | |||||||| | ||||||||   ||||||| ||||| || ||||||||||||||||    
T  1475 gaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaacatgcgtta 1556  T

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Target: scaffold0163 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 35776 - 35840
Alignment:
Q  3 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacg 67  Q
    ||||||||||| ||| |||||  | || |||||||||||||||||||  ||||||| ||||||||    
T  35776 gaattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaatgcccctacg 35840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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