View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_16 (Length: 539)
Name: NF0342_2D_low_16
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 111 - 401
Target Start/End: Original strand, 8783831 - 8784121
Alignment:
| Q |
111 |
gaatcaacccgagttcaatcgggttaactagattgtggttcagctgagatcaaaccaaccagcaaactggtcgattccagattggttaagtttagttttt |
210 |
Q |
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| T |
8783831 |
gaatcaacccttgttcaatcgggttaactagattgtggttcagttgagatcaaaccaaccagcaaactggtcgattccagattggttaagtttagttttt |
8783930 |
T |
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| Q |
211 |
aaaccaatgatccatagaatgctaaacaactatgtcaaacaaggtcggtccaataatttgcaatagtgaggtcttaaacaagtttgaatatacgaggtct |
310 |
Q |
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| T |
8783931 |
aaaccaatgatccatagaatgctaaacatctatgtcaaacaaggtcggtccaataatttgcaatagtgaggtcttaaacaagtttgaatatacaaagtct |
8784030 |
T |
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| Q |
311 |
ttttgtctatatacatggcctttttcgtgggcctaaaactagagttttagtagcctaatccttggaccgactcggttgtcaatcataccat |
401 |
Q |
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| T |
8784031 |
ttttgtctatatacatggcctttttcgtgggcctaaaactagagttttagtagcctaatccttggaccggcttggttgtcaatcataccat |
8784121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 105 - 383
Target Start/End: Complemental strand, 7110811 - 7110523
Alignment:
| Q |
105 |
tcggtagaatcaacccgagttcaatcgggttaactagattgtggttcagctgagatcaaaccaaccagcaaactggtcgattccagattg---------g |
195 |
Q |
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| T |
7110811 |
tcggtaaaatcaactcgagttcaatctggttaaccagactgtggtaaa--tgagatcaaacc--ccaccaaactggtcgattccatattgaacctattgg |
7110716 |
T |
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| Q |
196 |
ttaagtttagtttttaaaccaatgatccatagaatgctaaacaactatgtcaaacaaggtcggtccaataatttgcaatagtgaggtcttaaacaagttt |
295 |
Q |
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| T |
7110715 |
ttaagttcggttttttaaccattgatccatagaatggtaaacaattatgtcaaacaaggtcggtccaataatttgcaatagtgaggtcttaaacaagttt |
7110616 |
T |
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| Q |
296 |
gaatatacgaggtctttttgtctatatacatggcctttttcgtgggcctaaaacta-----gagttttagtagcctaatccttggaccgactc |
383 |
Q |
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| T |
7110615 |
taatatatgagttctttttgtctataaacatggcctttttcgtgagcctaaaactatagtttagttttagtagcctaacccttagaccgactc |
7110523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 8783733 - 8783763
Alignment:
| Q |
18 |
gagttatggttcaattcgtacaaccccattt |
48 |
Q |
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| T |
8783733 |
gagttatggttcaattcgtacaaccccattt |
8783763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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