View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_23 (Length: 457)
Name: NF0342_2D_low_23
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 28862322 - 28862029
Alignment:
| Q |
1 |
agttctcctcagttttattcaatgcggaaaagaatgctgcagacagtgttgcacatcgacccaatggtcgatccatatttgcaatttcactagtattgta |
100 |
Q |
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| T |
28862322 |
agttctcctcagttttattcaatgcggaaaagaatgctgcagacagtgttgcacatcgacccaatggtcgatccatatttgcaatttcactagtattgta |
28862223 |
T |
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| Q |
101 |
ttgatcaaattctgcaattaagtcagaataatatcaatgagattaaataatcaccatgaatcttaaacctgttcttgtgaaatgctaaattctatatttg |
200 |
Q |
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| T |
28862222 |
ttgatcaaattctgcaattaagtcagaataatatcaatgagattaaataatcaacatgaatcttaaacctgttcttgtgaaattctaaattctatatttg |
28862123 |
T |
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| Q |
201 |
gtaacagttaaaagaccatgaaatttttgcatgtgatttcaaacatacatcatttcatggattccttaaagcagatatacatttagaaactctt |
294 |
Q |
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| T |
28862122 |
gtaacagttaaaagaccatgaaatttttgcatgtgatttcaaacatacatcatttcatggattccttaaagcagatatacatttagaaactctt |
28862029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 28862006 - 28861921
Alignment:
| Q |
363 |
acgatcaaaattcaagaattcattcaagaacgtacactcacatgcatgctttcttgtaatcagagattcaaagatgtccatctcat |
448 |
Q |
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| T |
28862006 |
acgatcaaaattcaagaattcattcaagaacgtacactcacatgcatgctttcatgtaatcagagattcaaagatgtatatctcat |
28861921 |
T |
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