View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_2D_low_25 (Length: 436)
Name: NF0342_2D_low_25
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_25 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 10746387 - 10746800
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746387 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
10746486 |
T |
|
| Q |
118 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746487 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtcca |
10746586 |
T |
|
| Q |
218 |
agatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746587 |
agatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcat |
10746686 |
T |
|
| Q |
318 |
ttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctattaatacgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746687 |
ttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctattaatacgat |
10746786 |
T |
|
| Q |
418 |
gtccctagtataat |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10746787 |
gtccctagtataat |
10746800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 427
Target Start/End: Original strand, 10716347 - 10716750
Alignment:
| Q |
21 |
ctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtcca |
120 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||| |||||||||| ||||||| |
|
|
| T |
10716347 |
ctcaccagagagaaatgtctttctgattatgttgagctctctagtgacatccataatattcattctttctatcggtgattccattgtacaaacaagtcca |
10716446 |
T |
|
| Q |
121 |
atcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtccaaga |
220 |
Q |
| |
|
||||| ||||| |||||||| || || ||||| | |||||||||||||| || ||||||||||| ||||||||||||| |||||| || ||||| | |
|
|
| T |
10716447 |
atcctgaaaagagaaactaagcattcatttaccgcaggaataagattctctatgcttccatcttct---gcatctcttgatacaagatgtggatccaaaa |
10716543 |
T |
|
| Q |
221 |
tatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttc |
320 |
Q |
| |
|
| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10716544 |
tctttataagattgtcaggaaatgaagatgcaacaaagttatgcagattttgaccatcttgaaaaaattcatcagtgggtcttctaccggtaagcatttc |
10716643 |
T |
|
| Q |
321 |
cagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctattaatacgatgtc |
420 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |
|
|
| T |
10716644 |
caacataaggattccaaagctatacatgtcaccacatgtggacacttcagaacccattccatactctgaaacatgtagcaaaagctattaatacaatgcc |
10716743 |
T |
|
| Q |
421 |
cctagta |
427 |
Q |
| |
|
|||||| |
|
|
| T |
10716744 |
actagta |
10716750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 10612564 - 10612146
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
||||||||||| |||||||| || |||| |||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||| ||||| |||| |
|
|
| T |
10612564 |
tatctcaccagtgagaaaggctttatggattgtgttaagttctctagtaacatccacaatattcattctttctttgggtgattccattgaacaaagaagt |
10612465 |
T |
|
| Q |
118 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagat |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| | ||||||||||||||||| | |||||||||| || |||||| | |||| | ||||| |
|
|
| T |
10612464 |
ccaatcctaaaaagtgaaactaagcactcctttaaacttggaataagattctcactctttccatcttgtatttctacttctgcatattttgacacaagat |
10612365 |
T |
|
| Q |
209 |
gcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacc |
308 |
Q |
| |
|
| ||||||||||| |||||||||||| |||||||| | |||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
10612364 |
gtgggtccaagatctttataagattagcaggaaacagtgttgcaacaaagttatgtagattttgatcatcttcaaatgcctcatcagtgggtcttctacc |
10612265 |
T |
|
| Q |
309 |
agtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctat |
408 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10612264 |
ggtaagcatttccaacataaggattccaaagctatacatatcaccacatgtggatacttcagcacccatcccatactctaaaacatgtagcaaaagctat |
10612165 |
T |
|
| Q |
409 |
taatacgatgtccctagta |
427 |
Q |
| |
|
|||||| ||| | |||||| |
|
|
| T |
10612164 |
taatacaatgccactagta |
10612146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 10565857 - 10565452
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| ||| || || | || ||||||||||||||||| || |||| ||| |||||| |
|
|
| T |
10565857 |
tatctcaccagcaagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagt |
10565758 |
T |
|
| Q |
118 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatctt---------ctactgcatctcttgatagaagat |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||||| |||||||||| || ||||||| |||||| ||||| |
|
|
| T |
10565757 |
ccaatcctaaaaagtgaaactaagcactcctttgcaggtggaataagattctcatgatttccatctttcatttcaacttctgcatccattgataaaagat |
10565658 |
T |
|
| Q |
209 |
gcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacc |
308 |
Q |
| |
|
| |||||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
10565657 |
gtgggtccaaaatcttcttaagattaccaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttctacc |
10565558 |
T |
|
| Q |
309 |
agtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctat |
408 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| |||||| ||| |
|
|
| T |
10565557 |
ggtaagcatttccaacataaagattccaaagctatacatatcaccacatgtggatacttcagcacccatcccatactctaaaacatgtaacaaaagttat |
10565458 |
T |
|
| Q |
409 |
taatac |
414 |
Q |
| |
|
| |||| |
|
|
| T |
10565457 |
tcatac |
10565452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 10581849 - 10581445
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | |||||| || |||||| || |||||| ||||||||||||||| || |||| ||| |||||| |
|
|
| T |
10581849 |
tatctcaccggcaagaaaggcctttctgattatactaagctctatacatacatcctcaatattcagtctttcttttggtgactccattgaacacataagt |
10581750 |
T |
|
| Q |
118 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagat |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||| ||||||||||| | |||| || ||||||| ||||| |
|
|
| T |
10581749 |
ccaatcctaaaaagtgaaactaagcactcctttgcagctggaataagattctcaagatttccatcttccatttctacttctgcgtcccttgataaaagat |
10581650 |
T |
|
| Q |
209 |
gcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacc |
308 |
Q |
| |
|
| |||||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
10581649 |
gtgggtccaaaattttcttaagattagcaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttctacc |
10581550 |
T |
|
| Q |
309 |
agtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctat |
408 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||| ||| || |||||||||||||| |||||||||||| |||||| |||||| | | |
|
|
| T |
10581549 |
ggtaagcatttccaacataaggattccaaagctatacatgtcaccacatgcagatacttcagaacccatcccatactctaaagcatgtaacaaaaggtgt |
10581450 |
T |
|
| Q |
409 |
taata |
413 |
Q |
| |
|
||||| |
|
|
| T |
10581449 |
taata |
10581445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 10605606 - 10605211
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| |||| |||||| |||| ||||||| | |||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10605606 |
tatctcaccagcgagaaaggccttccggattgtgttaagctctttagtaacatccataatattcattctttctttcggtgattccattgaacaaataagt |
10605507 |
T |
|
| Q |
118 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgc---------atctcttgatagaagat |
208 |
Q |
| |
|
||||| ||||||||||||||||| | || | ||| |||||||||||||| || |||||||| ||||| ||| |||||||| || ||| | |
|
|
| T |
10605506 |
ccaattctaaaaagtgaaactaaggattcctctacccttggaataagattcgtatggtttccattttctattgctacttctacatctcttgttacaaggt |
10605407 |
T |
|
| Q |
209 |
gcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacc |
308 |
Q |
| |
|
| |||||||| || | | ||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
10605406 |
gtgggtccaaaatctctttaatattatcaggaaatgaagttgcaacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtctcctacc |
10605307 |
T |
|
| Q |
309 |
agtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaag |
404 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10605306 |
agtaagtatttccaacatcaggattccaaagctatacatgtcaccacatatagacacttcagaacccattccatactctgaaacatgtagaaaaag |
10605211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 10739781 - 10740186
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| |||||| | | ||||||| | |||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10739781 |
tatctcaccagcaagaaaggcctttcggattgtgttaagctcttgattaacatccataatattcattctttctttcggtgattccattgaacaaataagt |
10739880 |
T |
|
| Q |
118 |
ccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactg---------catctcttgatagaagat |
208 |
Q |
| |
|
||||| ||||||||||||||||| | || | ||| |||| ||| || | ||||||||||| || || ||||||||| | ||||| |
|
|
| T |
10739881 |
ccaattctaaaaagtgaaactaaggattcctctaccccaggaactagaatcgctcggtttccatcttgtattgttacttctacatctcttgcttcaagat |
10739980 |
T |
|
| Q |
209 |
gcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacc |
308 |
Q |
| |
|
| |||||||| || | ||||| ||| |||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10739981 |
gtgggtccaaaatctctataatgttaccaggaaacgaagttgctacaaagttatgtagattttgaccatcttgaaaaacttcatcagtgggtcttctacc |
10740080 |
T |
|
| Q |
309 |
agtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctat |
408 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
10740081 |
ggtaagtatttccaacataaggattccaaagctatacatgtcaccagatgttgacacttcagaacccattccatactctaaaacatgcagcaaaagttgt |
10740180 |
T |
|
| Q |
409 |
taatac |
414 |
Q |
| |
|
|||||| |
|
|
| T |
10740181 |
taatac |
10740186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 45 - 397
Target Start/End: Original strand, 10762223 - 10762584
Alignment:
| Q |
45 |
gattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacac |
144 |
Q |
| |
|
|||| |||| |||||| ||| ||||||| | |||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| | |
|
|
| T |
10762223 |
gattgtgttaagctcttgagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaaggat |
10762322 |
T |
|
| Q |
145 |
tcttttacagttggaataagattctcattgtttccatctt---------ctactgcatctcttgatagaagatgcgggtccaagatatttataagattat |
235 |
Q |
| |
|
|| | ||| || ||||||| || | ||||||||||| || || ||||||||| | |||||| |||||||| |||| ||||| ||| |
|
|
| T |
10762323 |
tcctctacccctgcaataagaatcgctcggtttccatcttgttttgttacttctacatctcttgcttcaagatgtgggtccaaaatatctataatgttac |
10762422 |
T |
|
| Q |
236 |
caggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattcc |
335 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||| ||| |
|
|
| T |
10762423 |
caggaaatgaagctgctacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtcttctaccagtaagtattttcaacataaggactcc |
10762522 |
T |
|
| Q |
336 |
aaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgta |
397 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10762523 |
aaagctatacatgtcaccagatgttgacacttcagaacccattccatactctaaaacatgta |
10762584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 233 - 404
Target Start/End: Original strand, 11048241 - 11048412
Alignment:
| Q |
233 |
tatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggat |
332 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
11048241 |
tatcaggaagtgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatgggtgggtcttctaccggtaagcatttccaacataaggat |
11048340 |
T |
|
| Q |
333 |
tccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaag |
404 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11048341 |
tccaaagctatacatgtcaccacacgtggacacttcagaacccattccatactctaaaacatgtagaaaaag |
11048412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 80 - 414
Target Start/End: Original strand, 10587895 - 10588220
Alignment:
| Q |
80 |
tcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttcc |
179 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||||| | |||||||||||| |||| | || |||||||||||||||||| | ||| |
|
|
| T |
10587895 |
tcattctttcttttggtgattccattgaacaagcaagtccaatccttagaagtgaaactaagcacttctccttagctggaataagattctcattatgtcc |
10587994 |
T |
|
| Q |
180 |
atcttctactgcatctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatct |
279 |
Q |
| |
|
|||||||| |||| | |||||| |||||||| || | |||||||||||| |||| || || ||||||| |||| ||||||||||||||| |
|
|
| T |
10587995 |
atcttcta---------ttgaaacaagatgtgggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattttgaccatct |
10588085 |
T |
|
| Q |
280 |
tcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattc |
379 |
Q |
| |
|
||||| | |||||| ||||||||||| || || | |||||||| |||||| || |||||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
10588086 |
tcaaacatttcatctgtgggtcttcttccggtgatcatttccaacataagcatcccaaagctatacatgtcaccagatgtggatacttcagaacccattc |
10588185 |
T |
|
| Q |
380 |
catactctaaaacatgtagcaaaagctattaatac |
414 |
Q |
| |
|
||||||||| || || ||||||||| ||||||| |
|
|
| T |
10588186 |
catactctacaagattaagcaaaagcatttaatac |
10588220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 79 - 391
Target Start/End: Original strand, 10651619 - 10651940
Alignment:
| Q |
79 |
ttcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttc |
178 |
Q |
| |
|
|||||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||||| | |||||||||| | | ||| || ||||| |
|
|
| T |
10651619 |
ttcattctttcttttggtgatttcactgaacaagcaagtccaatcctgaaaagtgaaactaaacacttctctacagttggagtgaaatttccacagtttc |
10651718 |
T |
|
| Q |
179 |
catcttcta---------ctgcatctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagatt |
269 |
Q |
| |
|
| ||||||| || ||| ||||| || |||||| || ||||| || | ||||| ||||| |||||| || ||| ||||||| |||||| ||| |
|
|
| T |
10651719 |
cttcttctatttcttcttcttcatttcttggtacaagatgtggatccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaatt |
10651818 |
T |
|
| Q |
270 |
ttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttca |
369 |
Q |
| |
|
|||||| |||||||| | | |||| || |||||||| || ||||||||||||| |||||| | || ||||||||||| |||||||||||||| | |||| |
|
|
| T |
10651819 |
ttgaccttcttcaaacattccatctgttggtcttcttccggtaagcatttccaacataagcaccccgaagctatacatgtcaccatatgtggatatttca |
10651918 |
T |
|
| Q |
370 |
gaacccattccatactctaaaa |
391 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10651919 |
gaacccattccatactctaaaa |
10651940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 388
Target Start/End: Complemental strand, 7193813 - 7193481
Alignment:
| Q |
65 |
tgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacagttggaataag |
164 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||| |||| | |||| ||||| | | |
|
|
| T |
7193813 |
tgacatccactatattcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgcacttctctacatttggagtgaa |
7193714 |
T |
|
| Q |
165 |
attctcattgtttccatcttctactgc---------atctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacgatattgcaaca |
255 |
Q |
| |
|
||| || ||||||||||||||| || || ||||| || ||||| |||||||| |||| ||||||||||| ||| ||||| ||| ||||| |
|
|
| T |
7193713 |
atttccactgtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaaca |
7193614 |
T |
|
| Q |
256 |
aagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccat |
355 |
Q |
| |
|
|| || | ||||||||||||| ||||| | |||||| ||||| || || ||||| ||||||| || ||| || || ||||||||||||||||||| |
|
|
| T |
7193613 |
aaaatacgtagattttgaccattgtcaaacatttcatctaccggtctccttccggtaagaatttccaacaaaagcatcccgaagctatacatatcaccat |
7193514 |
T |
|
| Q |
356 |
atgtggacacttcagaacccattccatactcta |
388 |
Q |
| |
|
|||| || |||||||||||||||||||| |||| |
|
|
| T |
7193513 |
atgtagatacttcagaacccattccatattcta |
7193481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 394
Target Start/End: Original strand, 9835721 - 9836069
Alignment:
| Q |
55 |
agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag |
154 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||||||||||||||| ||| ||| |||||||||||| |||| ||||||||| || | ||||||| |
|
|
| T |
9835721 |
agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag |
9835820 |
T |
|
| Q |
155 |
ttggaataagattctcattgtttccatcttctactgc---------atctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacga |
245 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||| |||||||| || || ||| ||||||| || | | ||||||| ||| || || |
|
|
| T |
9835821 |
ctggaataagattctcactatttccatcttctattgctgcttcttcatctcttggtacaaaatgttggtccaaaatctgtgaaagattaccagctaatga |
9835920 |
T |
|
| Q |
246 |
tattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatac |
345 |
Q |
| |
|
|| || |||| || | |||||||||||||| ||||| |||||| || |||||||| ||||||| |||||||| || || || |||||||||||| |
|
|
| T |
9835921 |
actttcagcaaacgtacgtagattttgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatac |
9836020 |
T |
|
| Q |
346 |
atatcaccatatgtggacacttcagaacccattccatactctaaaacat |
394 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9836021 |
atgtcaccatatgttgatgcttcagaacccattccatactctaaaacat |
9836069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 10559500 - 10559370
Alignment:
| Q |
261 |
atgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtg |
360 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||| |||||||| || |||| |||||||| ||||| || |||||||||||||| ||||||| |||| |
|
|
| T |
10559500 |
atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtg |
10559401 |
T |
|
| Q |
361 |
gacacttcagaacccattccatactctaaaa |
391 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
10559400 |
gaaacttcagaacccattccatactctaaaa |
10559370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 10659453 - 10659823
Alignment:
| Q |
30 |
aagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaa |
129 |
Q |
| |
|
|||||| |||||| |||||||| | | |||||| |||||||| || |||||||||||||||||||||||| | || ||| ||||||||||| |||| |
|
|
| T |
10659453 |
aagaaatgcctttttgattatgcttaactctctggtgacatcaactatattcattctttcttttggtgatttcactgaacatgcaagtccaatccgaaaa |
10659552 |
T |
|
| Q |
130 |
agtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagatgcgggtccaaga |
220 |
Q |
| |
|
||||||||||| |||| | ||| ||||| | ||| || | ||||| ||||||| || ||| ||||| || |||||| |||||||| | |
|
|
| T |
10659553 |
agtgaaactaagcacttctctacgattggagggaaatttccactctttccttcttctattttggcttcttcatttcttggtacaagatgtgggtccaaaa |
10659652 |
T |
|
| Q |
221 |
tatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttc |
320 |
Q |
| |
|
| | || || ||||| ||||| || ||| ||||||| |||||||||||||||| |||||||| | |||||| || |||||||| || ||||||||||| |
|
|
| T |
10659653 |
tctgtaaaatattatttggaaatgaaatttcaacaaatatatgcagattttgaccctcttcaaacatttcatccgttggtcttcttccggtaagcatttc |
10659752 |
T |
|
| Q |
321 |
cagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaa |
391 |
Q |
| |
|
|| || ||| | || ||||||||||| ||||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
10659753 |
caacagaagcaccccgaagctatacatgtcaccatgtgtggatatctcagaacccattccatactctaaaa |
10659823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 210 - 391
Target Start/End: Original strand, 19605423 - 19605604
Alignment:
| Q |
210 |
cgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacca |
309 |
Q |
| |
|
||||||||| || || |||| ||||||||||| || ||| ||||| | | ||||||||||||||||| ||| | ||||| || |||||||| || |
|
|
| T |
19605423 |
cgggtccaaaatcttcataatgttatcaggaaatgaaatttcaacatacaaacgcagattttgaccatctgtaaacatgtcatccgtcggtcttcttccc |
19605522 |
T |
|
| Q |
310 |
gtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaa |
391 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
19605523 |
gtaagcatttccaatataagcatcccaaagctatacatatcaccatgtgtggaaacttcagaactcattccatactctaaaa |
19605604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 55 - 359
Target Start/End: Original strand, 9827352 - 9827665
Alignment:
| Q |
55 |
agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag |
154 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||||||||||||||| ||| ||| |||||||||||| |||| ||||||||| || | ||||||| |
|
|
| T |
9827352 |
agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag |
9827451 |
T |
|
| Q |
155 |
ttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacga |
245 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| || ||||||||| || || ||| ||| ||| || | | ||||||||||| || || |
|
|
| T |
9827452 |
ctggaataagattctcactatttccatcttctattgctgcttcttcatctcttggtacaaaatgttggttcaaaatctgtgaaagattatcagctaatga |
9827551 |
T |
|
| Q |
246 |
tattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatac |
345 |
Q |
| |
|
|| || |||| || | |||||||||||||| ||||| |||||| || |||||||| ||||||| |||||||| || || || |||||||||||| |
|
|
| T |
9827552 |
actttcagcaaacgtacgtagattttgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatac |
9827651 |
T |
|
| Q |
346 |
atatcaccatatgt |
359 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
9827652 |
atgtcaccatatgt |
9827665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 9825604 - 9825523
Alignment:
| Q |
310 |
gtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaa |
391 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||| |||||||| ||||| |||| |||| |||||||||||||||||| |
|
|
| T |
9825604 |
gtaagcatttccaatataggaattccaaagctatacatgtcaccataagtggaaactttagaatccattccatactctaaaa |
9825523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 10559746 - 10559630
Alignment:
| Q |
24 |
accagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatc |
123 |
Q |
| |
|
|||||||||||| |||||||||| ||||| || |||||||||||||||| |||||||||||| | |||| ||||| | | ||| |||||||||| |
|
|
| T |
10559746 |
accagcaagaaaaacctttctgatcatgtttagttctctagtgacatccaatatattcattctttgtgttggcgattccaccgaacatgcaagtccaatc |
10559647 |
T |
|
| Q |
124 |
ctaaaaagtgaaactaa |
140 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
10559646 |
ctaaagagtgaaactaa |
10559630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 10216487 - 10216546
Alignment:
| Q |
361 |
gacacttcagaacccattccatactctaaaacatgtagcaaaagctattaatacgatgtc |
420 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
10216487 |
gacacttcaacacccattccatactctaaaatatgtaacaaaagctattaatactatgtc |
10216546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 9849623 - 9849680
Alignment:
| Q |
40 |
tttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtg |
97 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
9849623 |
tttctgattatgtttagctctctagtgacatccattgtattcattcttgctttcggtg |
9849680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 10760796 - 10760860
Alignment:
| Q |
120 |
aatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatctt |
184 |
Q |
| |
|
||||||||| ||||||||||| |||| | |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
10760796 |
aatcctaaacagtgaaactaagcacttctctacacttggaataagattcccattgtttccatctt |
10760860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 19605222 - 19605334
Alignment:
| Q |
18 |
tatctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagt |
117 |
Q |
| |
|
||||| ||||| ||||| | ||||||||||||||| |||||||||||| |||| | |||||||||||||||| || ||||| || | ||| |||| |
|
|
| T |
19605222 |
tatcttaccagtgagaaaagtctttctgattatgtttagctctctagtggcatcttctatattcattctttctttgggagattccatcgaacaggcaagt |
19605321 |
T |
|
| Q |
118 |
ccaatcctaaaaa |
130 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19605322 |
ccaatcctaaaaa |
19605334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 10551596 - 10551530
Alignment:
| Q |
77 |
tattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaaca |
143 |
Q |
| |
|
||||||||||||||||||||||||| | || |||| |||| ||||||||| |||||||| |||||| |
|
|
| T |
10551596 |
tattcattctttcttttggtgattccactgaacaagaaagtgcaatcctaagaagtgaaagtaaaca |
10551530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 10582472 - 10582419
Alignment:
| Q |
378 |
tccatactctaaaacatgtagcaaaagctattaatacgatgtccctagtataat |
431 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||| ||||| || ||||||| |
|
|
| T |
10582472 |
tccatacgctaaaacatgtaggaaaagctgttaatactatgtcgctggtataat |
10582419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 10551336 - 10551280
Alignment:
| Q |
331 |
attccaaagctatacatatcaccatatgtggacacttcagaacccattccatactct |
387 |
Q |
| |
|
||||||||||||||||| ||||| | || ||||| ||| ||||||||||||||||| |
|
|
| T |
10551336 |
attccaaagctatacatgtcaccttcagttgacacctcaaaacccattccatactct |
10551280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 12958910 - 12958510
Alignment:
| Q |
19 |
atctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtc |
118 |
Q |
| |
|
||||||||||| |||||| |||| |||| || | ||||||||||||||||| ||| ||||||||||||||||||||||||| | || ||| | ||||| |
|
|
| T |
12958910 |
atctcaccagctagaaagaccttctggattgtggtaagctctctagtgacatcgacaatattcattctttcttttggtgattccaatgaacataaaagtc |
12958811 |
T |
|
| Q |
119 |
caatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgc---------atctcttgatagaagatg |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||||| |||||| |||||||||||| ||| | |||||| || |||||| |
|
|
| T |
12958810 |
caatcctaaaaagtgaaactaagcactcctctacagttggaataagaatctcatgatttccatcttctcttgctccatcttcagctcttggtaaaagatg |
12958711 |
T |
|
| Q |
210 |
cgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacca |
309 |
Q |
| |
|
|| ||||| || ||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12958710 |
tggatccaacatctttattagattatcaggaaatgaatttgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctacca |
12958611 |
T |
|
| Q |
310 |
gtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctatt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
12958610 |
gtaagcatttccagcataaggattccaaagctatacatgtcaccacatgtggatacttctgaacccatcccatactctaaaacatgtaacaaaaggtatt |
12958511 |
T |
|
| Q |
410 |
a |
410 |
Q |
| |
|
| |
|
|
| T |
12958510 |
a |
12958510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 12900405 - 12900002
Alignment:
| Q |
19 |
atctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtc |
118 |
Q |
| |
|
||||||||||| |||||| |||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||| | | ||| | |||| |
|
|
| T |
12900405 |
atctcaccagctagaaagaccttctggattgtggtaagctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtg |
12900306 |
T |
|
| Q |
119 |
caatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgc------------atctcttgatagaag |
206 |
Q |
| |
|
||||||||| |||||||||||| ||||||| || |||||||||| || |||||| ||||||||||||| ||| | |||||| || ||| |
|
|
| T |
12900305 |
caatcctaagaagtgaaactaagcactcttctatagttggaatatgaatctcatgatttccatcttctattgctcctaattcttcagctcttggtaaaag |
12900206 |
T |
|
| Q |
207 |
atgcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttcta |
306 |
Q |
| |
|
||| || ||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12900205 |
atgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttcta |
12900106 |
T |
|
| Q |
307 |
ccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagct |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| |||||||| ||||||||||||| ||||| |||||| | |
|
|
| T |
12900105 |
ccagtaagcatttccagcataaggattccaaagctatacatgtcaccacaagtggatacttctgaacccatcccatactctaaaatatgtaacaaaaggt |
12900006 |
T |
|
| Q |
407 |
atta |
410 |
Q |
| |
|
|||| |
|
|
| T |
12900005 |
atta |
12900002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 12933111 - 12932726
Alignment:
| Q |
19 |
atctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtc |
118 |
Q |
| |
|
||||||||||| | |||| |||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||| | | ||| | |||| |
|
|
| T |
12933111 |
atctcaccagctaaaaagaccttctggattgtggtaagctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtg |
12933012 |
T |
|
| Q |
119 |
caatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagatg |
209 |
Q |
| |
|
||||||||| ||||||||| || || |||| || |||||||||| || |||||| ||||||||||||| || || |||||| || |||||| |
|
|
| T |
12933011 |
caatcctaagaagtgaaacaaagcaatcttctatagttggaatatgaatctcatgatttccatcttctattgctccttcttcagctcttggtaaaagatg |
12932912 |
T |
|
| Q |
210 |
cgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacca |
309 |
Q |
| |
|
|| ||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
12932911 |
tggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcggtgggtcttctacca |
12932812 |
T |
|
| Q |
310 |
gtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
12932811 |
gtaagcatttccagcataaggattccaaagctatacatgtcaccacatgtggaaacttctgaacccatcccatactctaaaacatg |
12932726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 12949451 - 12949064
Alignment:
| Q |
19 |
atctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtc |
118 |
Q |
| |
|
||||||||||| |||||| |||| |||| || | ||||||||||||||||||||| ||||||||||||| |||| |||||| | || ||||| ||||| |
|
|
| T |
12949451 |
atctcaccagctagaaagaccttatggattgtggtaagctctctagtgacatccacaatattcattctttcatttgatgattccaatgaacaaaaaagtc |
12949352 |
T |
|
| Q |
119 |
caatcctaaaaagtg-aaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtcca |
217 |
Q |
| |
|
||||||||||||| | ||||| | ||||||| || ||||||||||||| |||||| ||||||||||| | |||||| || |||||| || |||| |
|
|
| T |
12949351 |
caatcctaaaaaggggaaactgagcactcttctatagttggaataagaatctcatgatttccatcttc------agctcttggtaaaagatgtggatcca |
12949258 |
T |
|
| Q |
218 |
agatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcat |
317 |
Q |
| |
|
| || |||| | ||||| ||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12949257 |
aaatctttacgaaattattgggaaatgaaattttaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcat |
12949158 |
T |
|
| Q |
318 |
ttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctattaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | ||||| ||||| |||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
12949157 |
ttccagcataaggattccaaagctatacatgtcaccacaagtggatacttccgaacccatcccatactctaaaacatgtaacaaaaggtattaa |
12949064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 12908022 - 12907622
Alignment:
| Q |
19 |
atctcaccagcaagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtc |
118 |
Q |
| |
|
||||||||||| | |||| |||| |||| || | ||||||||| ||||||| ||| |||||||||||||||||| |||||| | || ||| | ||||| |
|
|
| T |
12908022 |
atctcaccagctaaaaagaccttctggattgtggtaagctctctattgacatctacaatattcattctttcttttgttgattccaatgaacataaaagtc |
12907923 |
T |
|
| Q |
119 |
caatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttcta---------ctgcatctcttgatagaagatg |
209 |
Q |
| |
|
||||||||||||||||| ||| ||||| | |||| ||||||||||| |||||| |||||||||||| || || |||||| || |||||| |
|
|
| T |
12907922 |
caatcctaaaaagtgaagttaagcactcctctacatttggaataagaatctcatgaattccatcttctattcctccttcttcagctcttggtaaaagatg |
12907823 |
T |
|
| Q |
210 |
cgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctacca |
309 |
Q |
| |
|
|| ||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12907822 |
tggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctacca |
12907723 |
T |
|
| Q |
310 |
gtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaagctatt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| ||||||| ||||||||||||| ||||| |||||| |||| |
|
|
| T |
12907722 |
gtaagcatttccagcataaggattccaaagctatacatgtcaccacaagtggatacttctgaacccaccccatactctaaaatatgtaacaaaaggtatt |
12907623 |
T |
|
| Q |
410 |
a |
410 |
Q |
| |
|
| |
|
|
| T |
12907622 |
a |
12907622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 55 - 403
Target Start/End: Original strand, 17922810 - 17923167
Alignment:
| Q |
55 |
agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag |
154 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||| |||||||||||||||||| |||||||| ||||| | ||||| |
|
|
| T |
17922810 |
agctctctagtgacatccacaatattcattctttcttttggtgattccaatgaacaaaaaagtccaatcctaaaaagggaaactaagcactcctctacag |
17922909 |
T |
|
| Q |
155 |
ttggaataagattctcattgtttccatcttctactgc---------atctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacga |
245 |
Q |
| |
|
|||||| |||| |||||| |||||||||||| ||| | |||||| || |||||| || ||||| || ||||||||||| |||||| || |
|
|
| T |
17922910 |
ttggaagaagaatctcatgatttccatcttctcgtgctccatcttcagctcttggtaaaagatgtggatccaaaatctttataagattgcaaggaaatga |
17923009 |
T |
|
| Q |
246 |
tattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatac |
345 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||| ||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923010 |
aattgtaacaaagttatgtagattttgaccgtctttaaaaagttcatcggtgggtcttcttccggtaagcatttccagcataaggattccaaagctatac |
17923109 |
T |
|
| Q |
346 |
atatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaa |
403 |
Q |
| |
|
|| |||||||| ||||| ||||| |||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
17923110 |
atgtcaccataagtggatacttctgaacccatcccatactctaaaatatgtaacaaaa |
17923167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 195 - 402
Target Start/End: Complemental strand, 7940 - 7733
Alignment:
| Q |
195 |
tcttgatagaagatgcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatca |
294 |
Q |
| |
|
||||| || |||||| || ||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7940 |
tcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatca |
7841 |
T |
|
| Q |
295 |
gtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
7840 |
gtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcaccacatgtggatacttcttaacccatcccatactctaaaacat |
7741 |
T |
|
| Q |
395 |
gtagcaaa |
402 |
Q |
| |
|
||| |||| |
|
|
| T |
7740 |
gtaacaaa |
7733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 31466541 - 31466638
Alignment:
| Q |
46 |
attatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaaca |
143 |
Q |
| |
|
||||| || ||||||||| |||| || || || |||| ||||||||||||||||| |||| |||| |||| |||| ||||||||||||| |||||| |
|
|
| T |
31466541 |
attatattaagctctctaatgacttcaaccatactcatcctttcttttggtgattccattgaacaaccaagtgcaatactaaaaagtgaaattaaaca |
31466638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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