View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_26 (Length: 382)

Name: NF0342_2D_low_26
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_26
NF0342_2D_low_26
[»] chr6 (17 HSPs)
chr6 (91-382)||(16655603-16655893)
chr6 (91-344)||(16558451-16558702)
chr6 (91-198)||(16870423-16870530)
chr6 (273-382)||(16784994-16785103)
chr6 (271-382)||(16794930-16795041)
chr6 (271-378)||(17095709-17095816)
chr6 (271-382)||(16870265-16870376)
chr6 (273-382)||(16778898-16779007)
chr6 (62-133)||(16784791-16784862)
chr6 (271-382)||(17067201-17067312)
chr6 (271-382)||(16985167-16985275)
chr6 (92-192)||(17067012-17067112)
chr6 (94-167)||(16984995-16985065)
chr6 (84-201)||(16794747-16794858)
chr6 (273-322)||(16841550-16841599)
chr6 (271-338)||(18808556-18808623)
chr6 (273-322)||(16836439-16836488)
[»] scaffold0133 (4 HSPs)
scaffold0133 (271-382)||(10568-10679)
scaffold0133 (273-382)||(6222-6331)
scaffold0133 (273-312)||(15867-15906)
scaffold0133 (93-161)||(6055-6120)
[»] scaffold0256 (1 HSPs)
scaffold0256 (273-382)||(6881-6990)
[»] chr3 (3 HSPs)
chr3 (271-382)||(38941681-38941792)
chr3 (274-382)||(7055606-7055717)
chr3 (95-135)||(7055838-7055878)
[»] chr8 (2 HSPs)
chr8 (271-382)||(13375802-13375913)
chr8 (91-136)||(13375613-13375657)
[»] chr2 (1 HSPs)
chr2 (271-319)||(20151581-20151629)
[»] scaffold0144 (1 HSPs)
scaffold0144 (271-341)||(4169-4239)
[»] scaffold0511 (1 HSPs)
scaffold0511 (271-333)||(3539-3601)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 91 - 382
Target Start/End: Original strand, 16655603 - 16655893
Alignment:
Q  91 cttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataagacaaagg 190  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  16655603 cttccatgctgataagatattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatattatagtaacacaaaagacaaagg 16655702  T
Q  191 aatcaaatattaagaaaggtggcaaatcaat-taaattaccactgattgttgattttgttggttctacaaaacgtggcaaatcaggaatgtgagctatct 289  Q
    |||||||||  |||  |   |  |||| ||  |||||||||||  |||||||  ||||||| |||| |||||  ||||||||||||||||||||||||||    
T  16655703 aatcaaata--aagggattcgttaaattaaagtaaattaccacaaattgttggctttgttgtttcttcaaaagatggcaaatcaggaatgtgagctatct 16655800  T
Q  290 tatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagttttggagttgctgaa 382  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||| |||||||||||||||||||||||    
T  16655801 tatgccaatcttcacctattcctctcttgcatctcttctccaacttagggcaaccacaaattcttaacttttgcaagttttggagttgctgaa 16655893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 91 - 344
Target Start/End: Complemental strand, 16558702 - 16558451
Alignment:
Q  91 cttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataa-tttgatattatagtaacacataagacaaag 189  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||    
T  16558702 cttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaatttttatattatagtaacacaaaagacaaag 16558603  T
Q  190 gaatcaaatattaagaaaggtggcaaa-tcaattaaattaccactgattgttgattttgttggttctacaaaacgtggcaaatcaggaatgtgagctatc 288  Q
    ||||||||||  |||  |   |  ||| | || |||||||||||  ||||||| |||||||| ||| ||| ||  |||||||||||||||||||||||||    
T  16558602 gaatcaaata--aagggattcgttaaattaaagtaaattaccacaaattgttggttttgttgtttccacagaagatggcaaatcaggaatgtgagctatc 16558505  T
Q  289 ttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatc 344  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  16558504 ttatgccaatcgtcacctattc--ctcttgcatctcttctccaacatagggcaatc 16558451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 16870530 - 16870423
Alignment:
Q  91 cttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataagacaaagg 190  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  16870530 cttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatattatagtaacacaaaagacaaagg 16870431  T
Q  191 aatcaaat 198  Q
    ||||||||    
T  16870430 aatcaaat 16870423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 16784994 - 16785103
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagttttgg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||  |||||||||||||    
T  16784994 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaacgatcaatacataacatttgcaagttttgg 16785093  T
Q  373 agttgctgaa 382  Q
    ||||||||||    
T  16785094 agttgctgaa 16785103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 16794930 - 16795041
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||||     
T  16794930 tcaggaacgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcatctccaacaaagggcaataatcaatacttaactcttgcaagtttc 16795029  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  16795030 ggagttgctgaa 16795041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 271 - 378
Target Start/End: Original strand, 17095709 - 17095816
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  17095709 tcaggaatgtgagctatctaatgccaatcttcacctattcctctcttacatctcttctccaacatagggcaattataaatgcttaactcttgcaattttt 17095808  T
Q  371 ggagttgc 378  Q
     |||||||    
T  17095809 agagttgc 17095816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 16870376 - 16870265
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||   |||||||     
T  16870376 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacttagggcaatcaacaatacttaactccatcaagtttg 16870277  T
Q  371 ggagttgctgaa 382  Q
     |||||||||||    
T  16870276 tgagttgctgaa 16870265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 16778898 - 16779007
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagttttgg 372  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||  |  ||||||||| | |||||||||||||    
T  16778898 aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacttaggacaacgaccaatacttaaatattgcaagttttgg 16778997  T
Q  373 agttgctgaa 382  Q
    ||||||||||    
T  16778998 agttgctgaa 16779007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 16784791 - 16784862
Alignment:
Q  62 gggtattgagttgggcggtggcagaattgcttccatgctgatatgatattctctgcacacattgtttaatat 133  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16784791 gggtattgagatgggcggtgccagaattgcttccatgctgatttgatattctctgcacacattgtttaatat 16784862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 17067201 - 17067312
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||  |||||||||||||| |||||||||||| || || || |  |||||||||      
T  17067201 tcaggaatgtgagctattttatgccaatcttcaccttttcctatcttcaatctcttctccaacttagggcaatcatcaaaacgtatcatttgcaagttcc 17067300  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  17067301 ggagttgctgaa 17067312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 16985167 - 16985275
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    ||||||||||||||||||||||||   |||||||     ||||||||| ||||||||||||||||||||||||||  |||| |||||| |||||| |||     
T  16985167 tcaggaatgtgagctatcttatgctggtcttcacaa---cctctcttgtatctcttctccaacatagggcaatcaataataattaacttttgcaaatttc 16985263  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  16985264 ggagttgctgaa 16985275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 17067012 - 17067112
Alignment:
Q  92 ttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataagacaaagga 191  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||  ||||||||| ||  |||||||| ||| || | ||||||    
T  17067012 ttccatgctgatttaatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattttattctatagtaagacaaaaaagaaagga 17067111  T
Q  192 a 192  Q
    |    
T  17067112 a 17067112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 16984995 - 16985065
Alignment:
Q  94 ccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatat 167  Q
    ||||||||||||||||||||||||||| |||||| |||   ||||||||| |||||||||||||||||||||||    
T  16984995 ccatgctgatatgatattctctgcacatattgttcaat---ataagtctaaaatcacaccatataatttgatat 16985065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 16794747 - 16794858
Alignment:
Q  84 agaattgcttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataag 183  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||||||   ||||||||| ||| | | |||   |||||||| |||||||| ||| |||    
T  16794747 agaattgcttccatgttgatataatattctctgcagacattgtttaat---ataagtctaaaataaaatcat---atttgatactatagtaaaacaaaag 16794840  T
Q  184 acaaaggaatcaaatatt 201  Q
    | |||||||| |||||||    
T  16794841 agaaaggaatgaaatatt 16794858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 16841550 - 16841599
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatc 322  Q
    |||||||||||||||||||||||||||||| ||| || || |||||||||    
T  16841550 aggaatgtgagctatcttatgccaatcttcccctgtttctttcttgcatc 16841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 18808623 - 18808556
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagg 338  Q
    ||||||| |||||||||||| ||||||||||| ||  ||||| |||||||||  ||||||||| ||||    
T  18808623 tcaggaacgtgagctatcttttgccaatcttccccagttcctttcttgcatcgtttctccaacttagg 18808556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 16836439 - 16836488
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatc 322  Q
    |||||||||||||||||| ||||||||||| ||| || || |||||||||    
T  16836439 aggaatgtgagctatcttgtgccaatcttcccctgtttctttcttgcatc 16836488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 10568 - 10679
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||| ||||||| |||||||||||    
T  10568 tcaggaatgtgagctatcttatgccaatcttcacctatacctctcttgcatctcttctccaacttagggcaaccacaaattcttaacttttgcaagtttt 10667  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  10668 ggagttgctgaa 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 6222 - 6331
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagttttgg 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |  ||||| |||||  |||||||||||||    
T  6222 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaatataggacaacctgaaatagttaacgtttgcaagttttgg 6321  T
Q  373 agttgctgaa 382  Q
    ||||||||||    
T  6322 agttgctgaa 6331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 15867 - 15906
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcct 312  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15867 aggaatgtgagctatcttatgccaatcttcaccttttcct 15906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 6055 - 6120
Alignment:
Q  93 tccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatt 161  Q
    |||||| || ||| ||||||||||||||||||||| |||   ||||||||| |||||||||||||||||    
T  6055 tccatgttgttataatattctctgcacacattgttcaat---ataagtctaaaatcacaccatataatt 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 6881 - 6990
Alignment:
Q  273 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagttttgg 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||   |||||||||||||    
T  6881 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaaccacaaatccttaagctttgcaagttttgg 6980  T
Q  373 agttgctgaa 382  Q
    ||||||||||    
T  6981 agttgctgaa 6990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 38941792 - 38941681
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||   ||   |||||||||||    
T  38941792 tcaggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacatagggcaagcaacaatatacaatctttgcaagtttt 38941693  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  38941692 ggagttgctgaa 38941681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 7055717 - 7055606
Alignment:
Q  274 ggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctc-ttctc--caacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||  |||||||| || |  |  ||||||||||| ||| |||||||    
T  7055717 ggaatgtgagctatcttatgccaatcttcacctactcctctcttgcatcgctttctcaacaacatagagctacgaagaatacttaacttttgtaagtttt 7055618  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  7055617 ggagttgctgaa 7055606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 7055878 - 7055838
Alignment:
Q  95 catgctgatatgatattctctgcacacattgtttaatataa 135  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7055878 catgctgatatgatattctctgcacccattgttcaatataa 7055838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 13375802 - 13375913
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaatcataaatacttaactcttgcaagtttt 370  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||  |  ||||||||||  ||||||||||     
T  13375802 tcaggtatgtgagctatcttatcccaatcttctcctattcctctcttgcatcgcttctccaacatagagcaactaacaatacttaacctttgcaagtttc 13375901  T
Q  371 ggagttgctgaa 382  Q
    ||||||||||||    
T  13375902 ggagttgctgaa 13375913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 13375613 - 13375657
Alignment:
Q  91 cttccatgctgatatgatattctctgcacacattgtttaatataat 136  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||    
T  13375613 cttccatgttgatatgatattctctgcac-cattgttcaatataat 13375657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 20151581 - 20151629
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgc 319  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20151581 tcaggaatgttagctatcttatgccaatcttcacctattcctctcttgc 20151629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 4239 - 4169
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggca 341  Q
    ||||||| ||||| |||||||||||||||||| ||  ||||| ||||||||| ||||||||||||||||||    
T  4239 tcaggaacgtgagatatcttatgccaatcttccccggttcctttcttgcatcgcttctccaacatagggca 4169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 3601 - 3539
Alignment:
Q  271 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaac 333  Q
    ||||||| |||||||||||| ||||||||||| ||  ||||| |||||||||  |||||||||    
T  3601 tcaggaacgtgagctatcttttgccaatcttccccagttcctttcttgcatcgtttctccaac 3539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University