View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_2D_low_41 (Length: 338)
Name: NF0342_2D_low_41
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 4950327 - 4950024
Alignment:
| Q |
18 |
tcaacaaggtataaaaatccaacaactccttgaacaaaaagcaagaagctctttcaagcatgaagtaccacaatggaggcagacatggcactttgaaacg |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4950327 |
tcaacaaggtatcaaaatccaacaactccttgaacaaaaagcaagaagctcttacaagcatgaagtaccacaatggaggcagacatggcactttgaaacg |
4950228 |
T |
|
| Q |
118 |
tgcagatctcaacagatcttgaacatcagataatcgaaaaagtcaaacctgtagacattccaagattgtttggtgcacgttatctcgaggacatgcaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4950227 |
tgcagatctcaacagatcttgaacatcagagaatcgaaaatgtcaaacctgtagacattccaagattgtttggtgcacgttatctcgaggacatgcaagg |
4950128 |
T |
|
| Q |
218 |
tatatttctggaggcatactgacgatataaacaaggttatatttcccagttctatatgatatctcatcccaaattagcagctctactcgagggagattca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4950127 |
tatatttctggaggcatactgacgatataaacaaggttacatttcccagttctatatgatatctcatcccaaattagcggctctactcgagggagattca |
4950028 |
T |
|
| Q |
318 |
tgta |
321 |
Q |
| |
|
|||| |
|
|
| T |
4950027 |
tgta |
4950024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 10623557 - 10623452
Alignment:
| Q |
36 |
ccaacaactccttgaacaaa-----aagcaagaagctctttcaagcatgaagtaccacaatggaggcagacatggcactttgaaacgtgcagatctcaac |
130 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||| || ||||||||| | || ||||||| ||||||||||||| |
|
|
| T |
10623557 |
ccaacaactccctgaacaaagcagcaagcatgaagctctttcgagcatgaaataccaatgtgcaggcagacaagacaacttgaaacctgcagatctcaac |
10623458 |
T |
|
| Q |
131 |
agatct |
136 |
Q |
| |
|
| |||| |
|
|
| T |
10623457 |
aaatct |
10623452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University