View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_43 (Length: 337)

Name: NF0342_2D_low_43
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_43
NF0342_2D_low_43
[»] chr7 (6 HSPs)
chr7 (14-233)||(47543398-47543617)
chr7 (116-233)||(4609652-4609769)
chr7 (78-233)||(10315043-10315198)
chr7 (78-233)||(31030341-31030496)
chr7 (107-225)||(17116404-17116522)
chr7 (109-206)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (14-230)||(32160044-32160259)
chr1 (69-235)||(15259370-15259536)
chr1 (87-188)||(26260768-26260869)
chr1 (102-206)||(27568382-27568486)
chr1 (76-206)||(27363725-27363855)
chr1 (94-203)||(44675097-44675206)
chr1 (14-54)||(1951913-1951953)
chr1 (136-230)||(38133069-38133163)
chr1 (129-171)||(9484879-9484921)
chr1 (107-211)||(12688172-12688276)
chr1 (129-197)||(25392345-25392413)
chr1 (113-203)||(4889452-4889542)
chr1 (119-193)||(27264588-27264662)
chr1 (113-206)||(6723718-6723811)
chr1 (153-206)||(10686232-10686285)
chr1 (107-212)||(48973644-48973749)
chr1 (82-146)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (14-233)||(32196725-32196944)
chr6 (74-233)||(7824105-7824264)
chr6 (108-230)||(11324442-11324564)
chr6 (103-236)||(17292763-17292896)
chr6 (87-206)||(18673363-18673482)
chr6 (133-191)||(9200938-9200996)
chr6 (87-206)||(5667346-5667465)
chr6 (107-225)||(34714895-34715013)
chr6 (113-206)||(2682761-2682854)
chr6 (129-202)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (14-233)||(4740971-4741187)
chr3 (108-205)||(14788867-14788964)
chr3 (69-233)||(13043321-13043485)
chr3 (69-233)||(13051398-13051562)
chr3 (94-206)||(20017410-20017522)
chr3 (87-203)||(47160990-47161106)
chr3 (94-206)||(6894192-6894304)
chr3 (113-206)||(25845647-25845740)
chr3 (134-167)||(33388601-33388634)
chr3 (107-159)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (14-171)||(16610602-16610759)
chr5 (14-233)||(31706337-31706552)
chr5 (74-201)||(29651767-29651894)
chr5 (81-233)||(704490-704642)
chr5 (133-233)||(30722538-30722638)
chr5 (81-233)||(27482646-27482798)
chr5 (88-178)||(29994645-29994735)
chr5 (162-206)||(22922506-22922550)
chr5 (88-194)||(18967864-18967970)
chr5 (157-206)||(22924159-22924208)
chr5 (82-206)||(19314979-19315103)
chr5 (107-159)||(21041995-21042047)
chr5 (162-194)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (14-167)||(8090506-8090659)
chr2 (69-233)||(40638766-40638930)
chr2 (88-203)||(31640241-31640356)
chr2 (69-233)||(20948080-20948244)
chr2 (109-206)||(27708189-27708286)
chr2 (277-326)||(43451281-43451330)
chr2 (108-206)||(44735977-44736075)
chr2 (107-203)||(27009200-27009296)
chr2 (76-149)||(9420722-9420795)
chr2 (87-200)||(45131107-45131220)
chr2 (116-203)||(9840768-9840855)
chr2 (100-202)||(33645830-33645932)
chr2 (129-194)||(21563423-21563488)
chr2 (82-203)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (88-224)||(52577965-52578101)
chr4 (113-212)||(9831377-9831476)
chr4 (113-233)||(30972395-30972515)
chr4 (107-206)||(22653286-22653385)
chr4 (113-206)||(11131194-11131287)
chr4 (87-159)||(19846574-19846646)
chr4 (113-197)||(43001717-43001801)
chr4 (116-206)||(8830949-8831039)
chr4 (106-203)||(25130441-25130538)
chr4 (129-197)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (107-206)||(8462514-8462613)
chr8 (129-194)||(5751992-5752057)
chr8 (107-197)||(33282823-33282913)
chr8 (137-235)||(39435484-39435582)
chr8 (113-206)||(37929106-37929199)
chr8 (113-173)||(33191210-33191270)
chr8 (87-147)||(38738483-38738543)
[»] scaffold0236 (1 HSPs)
scaffold0236 (14-90)||(19937-20009)
[»] scaffold0204 (1 HSPs)
scaffold0204 (129-197)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 47543617 - 47543398
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  47543617 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacgg 47543518  T
Q  114 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 213  Q
    ||||||||| |||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47543517 actaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataacc 47543418  T
Q  214 gggcaatctttgacattaaa 233  Q
    |  |||||||||||||||||    
T  47543417 gaacaatctttgacattaaa 47543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 4609652 - 4609769
Alignment:
Q  116 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgg 215  Q
    |||||||||||  ||| ||||||| ||||||||||| | |||||| ||||||||||||| |||||||| | ||||||||||||||||||||  |||| |     
T  4609652 taagccaccacccatggtaattgaggggaagagaaatatacttcgccttcaaccacgtataagcaagcaatttaatcttatcgaccacctgattaacaga 4609751  T
Q  216 gcaatctttgacattaaa 233  Q
    ||| ||||||| ||||||    
T  4609752 gcattctttgatattaaa 4609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 10315198 - 10315043
Alignment:
Q  78 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 177  Q
    ||||||| ||||||| ||||| |||||  ||||| | ||||||||||||   || ||||||| |||||||||   | |||||  ||||||||| |||||     
T  10315198 aagaaacacttagcctatgcccaaaatagtaaacgggctaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccatgtaaag 10315099  T
Q  178 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  10315098 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 10315043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 31030341 - 31030496
Alignment:
Q  78 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 177  Q
    ||||||| ||||||| ||||| |||||  ||||| |  |||||||||||   || ||||||| |||||||||   | |||||  |||||||||||||||     
T  31030341 aagaaacacttagcctatgcccaaaatagtaaacgggttaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccacgtaaag 31030440  T
Q  178 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  31030441 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 31030496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 17116404 - 17116522
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||||||||   ||||||| |||||||||||||| || | |||| |||||||||| |||| || || |||||||||||||| ||||| ||    
T  17116404 taaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatcttatcaaccacttg 17116503  T
Q  207 gataaccgggcaatctttg 225  Q
     || |||| ||||||||||    
T  17116504 tattaccgagcaatctttg 17116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 38154001 - 38153904
Alignment:
Q  109 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||||||   ||| || || |||||||||| |  ||| |||  |||||||||| ||||||| || ||||||||| |||||||||||||    
T  38154001 aacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccacctaaaagcgagagacttaatcctatcgaccacctg 38153904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 32160259 - 32160044
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 113  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  32160259 ggacatcagagtcaagaacaatatatacaaaagttacctaagagatcataaacaaaaa-cagaaaagaaactcttagccaatgcctaaaatggtaaacgg 32160161  T
Q  114 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 213  Q
    |||||||||||||  ||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32160160 actaagccaccaccaatggtaattgaaggaaagagaaataaacttcgtcctcaaccacgtaaaagcaagcgacttaatcttatcgatcacctggataacc 32160061  T
Q  214 gggcaatctttgacatt 230  Q
    | |||||||||||||||    
T  32160060 gagcaatctttgacatt 32160044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 15259536 - 15259370
Alignment:
Q  69 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 168  Q
    |||||||||||||||||||||||| ||||| |  ||| ||||| |||||||| |||||  ||| ||||||| ||||||||||| | |||||| |||||||    
T  15259536 aaaacagaaaagaaactcttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagagaaatatacttcgccttcaac 15259437  T
Q  169 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 235  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||  || | ||||||||||||||    
T  15259436 cacgtaaaagcaagcgatttaatcttgtcgaccacctgattaaccgaacattatttgacattaaata 15259370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 26260869 - 26260768
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 186  Q
    |||||||||||| || ||| ||||  ||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||    
T  26260869 ttagccaatgcccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaagagac 26260770  T
Q  187 tt 188  Q
    ||    
T  26260769 tt 26260768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 27568486 - 27568382
Alignment:
Q  102 aatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacc 201  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| | || |||    
T  27568486 aatgacaaacagactaagccaccacccatggtaattgaagggaagagaaacaaattttgccttcaaccacgtaaaagcaagagacttaatcgtttctacc 27568387  T
Q  202 acctg 206  Q
    |||||    
T  27568386 acctg 27568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 27363725 - 27363855
Alignment:
Q  76 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaa 175  Q
    ||||||||  ||||||| ||||| |||||| ||||| ||||||||||| ||  ||| ||||||| || |||||||    |||||| ||||||||||| ||    
T  27363725 aaaagaaaaccttagcctatgcccaaaatggtaaacggactaagccacaacccatggtaattgagggaaagagaagagtacttcgccttcaaccacgaaa 27363824  T
Q  176 aagcaagcgacttaatcttatcgaccacctg 206  Q
    | |||||||||||||||||||||||||||||    
T  27363825 aggcaagcgacttaatcttatcgaccacctg 27363855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 44675206 - 44675097
Alignment:
Q  94 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 193  Q
    ||||| || ||||||||| |||||||||||||   |||||||||||||||||| ||| |||| |||| |||||||||| | || ||||| | ||||||||    
T  44675206 atgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgcaagtggcttaatct 44675107  T
Q  194 tatcgaccac 203  Q
    |||| |||||    
T  44675106 tatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 1951913 - 1951953
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcctaa 54  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1951913 ggacatcagagtcaagaacaatatatacaaaagttgcctaa 1951953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 38133069 - 38133163
Alignment:
Q  136 ttgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacatt 230  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||||||  |||||||| ||||| | |||||| ||||||| |||| ||||| ||||    
T  38133069 ttgaagggaagaaaaacaaatctcgccttcaaccacgtataagcaaaagacttaatgttatctatcacctgaataaccgagcaaactttgtcatt 38133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 9484921 - 9484879
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccac 171  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  9484921 atgataattgaagggaagagaaacaaatttcgccttcaaccac 9484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 12688276 - 12688172
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    ||||| |||||||||||||   |||||| || ||||||||||    |||||||  |||||||||| ||||||  ||| ||||||||||||| ||||||||    
T  12688276 taaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacctg 12688177  T
Q  207 gataa 211  Q
     ||||    
T  12688176 cataa 12688172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 25392345 - 25392413
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 197  Q
    ||||||||||||||||| | ||  |||||||| |||||||||| || | || |||||||||||||||||    
T  25392345 atgataattgaagggaaaataagaaaacttcgccttcaaccacatacatgcgagcgacttaatcttatc 25392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 4889542 - 4889452
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 203  Q
    ||||||| ||||||  |||||| || ||||||||||||   ||||||| ||| |||||| | || |||||||||||||| ||||| |||||    
T  4889542 gactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattttatcaaccac 4889452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27264662 - 27264588
Alignment:
Q  119 gccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 193  Q
    ||||||||  ||| ||||||| ||||||||||    |||||| ||||||||||| ||| ||||||||||||||||    
T  27264662 gccaccacccatggtaattgaggggaagagaagagtacttcgccttcaaccacgaaaaggcaagcgacttaatct 27264588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 6723718 - 6723811
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||   |||| ||||||| ||| ||| |  |||||||  |||||||||| ||||||  || ||||||||||| |||||||||||    
T  6723718 gactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 6723811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 10686232 - 10686285
Alignment:
Q  153 aaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||| ||||||||||| ||| | ||| |||||||||||||| ||||||||    
T  10686232 aaacttcgccttcaaccacgcaaatgtaagggacttaatcttatccaccacctg 10686285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 48973749 - 48973644
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||  ||| |||||| | ||||  | | ||||||| || || ||||||||    
T  48973749 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaattttgtccaccacctg 48973650  T
Q  207 gataac 212  Q
     |||||    
T  48973649 tataac 48973644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 36098596 - 36098660
Alignment:
Q  82 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaag 146  Q
    ||||||||||| ||||| || ||| | ||| |||||||||||||   ||||||||||||||||||    
T  36098596 aactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaag 36098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 32196725 - 32196944
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  32196725 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacgg 32196824  T
Q  114 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 213  Q
    ||||||||| |||  ||| ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||    
T  32196825 actaagccatcacccatgttaattgaagggaagagaactaaacttcgtcttcaaccatgtaaaagtaagcgacttaatctggtcgaccacctggataacc 32196924  T
Q  214 gggcaatctttgacattaaa 233  Q
    |  |||||||||||||||||    
T  32196925 gaacaatctttgacattaaa 32196944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 7824105 - 7824264
Alignment:
Q  74 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 173  Q
    ||||||||||| ||||||| ||||| |||||| | ||| | ||||||||||||  ||| ||||||| |||||||||   | |||||| ||||||||||||    
T  7824105 agaaaagaaacacttagcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgt 7824204  T
Q  174 aaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    ||| ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||||||    
T  7824205 aaaggcaagcgacttaatcttgtcgaccacctgattaaccgagcattctttgacattaaa 7824264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 11324564 - 11324442
Alignment:
Q  108 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctgg 207  Q
    |||| ||||||||||||||  |||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||| || |||| |||     
T  11324564 aaacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctga 11324465  T
Q  208 ataaccgggcaatctttgacatt 230  Q
    | ||||| |||| ||||| ||||    
T  11324464 agaaccgagcaaactttgtcatt 11324442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 17292763 - 17292896
Alignment:
Q  103 atgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 202  Q
    ||||||||| |||||||||| ||   |||||||||||||||||||||| |||| || |  ||||||||| | || || || ||||||||||||  |||||    
T  17292763 atgataaacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaatgacca 17292862  T
Q  203 cctggataaccgggcaatctttgacattaaatac 236  Q
    |||| |||| ||  || |||||| ||||||||||    
T  17292863 cctgcataatcgatcattctttgccattaaatac 17292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 18673482 - 18673363
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 186  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||   ||| | |||  |||||||||| |||||| ||| |||    
T  18673482 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaagactgacatatttctccttcaaccacataaaagtaagagac 18673383  T
Q  187 ttaatcttatcgaccacctg 206  Q
    ||||| ||||| ||||||||    
T  18673382 ttaattttatccaccacctg 18673363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 9200938 - 9200996
Alignment:
Q  133 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaat 191  Q
    ||||||| ||||||||||| | |||||| |||| |||||||||||||||||||||||||    
T  9200938 taattgaggggaagagaaatatacttcgccttctaccacgtaaaagcaagcgacttaat 9200996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 5667346 - 5667465
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 186  Q
    |||||| |||||||||||  ||||| |||||| ||||||   |||||||||||||| |||||  | |||| |||||||||||||  | ||||  ||  ||    
T  5667346 ttagcctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagttataaacctcgtcttcaaccatttgaaagtcagtaac 5667445  T
Q  187 ttaatcttatcgaccacctg 206  Q
    |||||| |||||||||||||    
T  5667446 ttaatcctatcgaccacctg 5667465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 34715013 - 34714895
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||||||||   ||| ||||||| ||||||||||  ||| || |  ||||||||| ||||||  || |||||||||||||| ||||| ||    
T  34715013 taaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacctaaaagtgagagacttaatcttatcaaccacgtg 34714914  T
Q  207 gataaccgggcaatctttg 225  Q
     || |||| ||| ||||||    
T  34714913 tattaccgagcattctttg 34714895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 2682854 - 2682761
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||   |||| |||||||| ||| || |  ||| |||  |||||||||| |||||||||| ||||||||||| ||||| |||||    
T  2682854 gactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacctaaaagcaagggacttaatcttgtcgacaacctg 2682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 7155495 - 7155422
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 202  Q
    ||||||||||||||| ||||||  ||| ||   ||||||||||||||||| |||  ||||||||||||| ||||    
T  7155495 atgataattgaagggtagagaagaaaatttttccttcaaccacgtaaaagtaagaaacttaatcttatcaacca 7155422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 4741187 - 4740971
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaaca 112  Q
    |||||||||||||||||||||||||||||| |||||||| ||| || |||    |||||||||||||||||||||||||| |||||||||||| |||||     
T  4741187 ggacatcagagtcaagaacaatatatacaatagttgcctgaacagagcat----aaaaaacagaaaagaaactcttagcctatgcctaaaatggtaaacg 4741092  T
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 212  Q
    |||||||||| |||  ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4741091 gactaagccatcacccatggtaattgaagggaagagaaatatacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctagataac 4740992  T
Q  213 cgggcaatctttgacattaaa 233  Q
    || ||||||||||||||||||    
T  4740991 cgagcaatctttgacattaaa 4740971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 14788964 - 14788867
Alignment:
Q  108 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacct 205  Q
    |||| ||||||||||||||| ||| |||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  14788964 aaactgactaagccaccactcatggtaattggagggaagagaaacaaatttcgccttcaaccacgtaaaagcaagggacttaatcttatctaccacct 14788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 13043485 - 13043321
Alignment:
Q  69 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 168  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13043485 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13043386  T
Q  169 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13043385 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13043321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 13051562 - 13051398
Alignment:
Q  69 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 168  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13051562 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13051463  T
Q  169 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13051462 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13051398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 20017410 - 20017522
Alignment:
Q  94 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 193  Q
    ||||| |||||| | ||| ||| |||||||||   ||| || || |||||||| |||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  20017410 atgcccaaaatggtgaacggacaaagccaccagccatggtagtttaagggaagtgaaacaaatttcttcttcaaccacgtataagcaagagacttaatct 20017509  T
Q  194 tatcgaccacctg 206  Q
    | || ||||||||    
T  20017510 tttctaccacctg 20017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 47161106 - 47160990
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 186  Q
    |||||||||||||||||  |||||| | |||||||||||   ||| |||||||| |||||||||  |||||||  |||||||||| ||||||  | | ||    
T  47161106 ttagccaatgcctaaaacaataaacggtctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaac 47161007  T
Q  187 ttaatcttatcgaccac 203  Q
    |||||| |||| |||||    
T  47161006 ttaatcctatccaccac 47160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 6894304 - 6894192
Alignment:
Q  94 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 193  Q
    |||||||||||  ||||| |||||| ||||||   ||||||||||||||||||||  | |||| ||| |||||||||  | ||||  ||  ||||||||     
T  6894304 atgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaaccatttgaaagtcagtaacttaatcc 6894205  T
Q  194 tatcgaccacctg 206  Q
    |||||||||||||    
T  6894204 tatcgaccacctg 6894192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 25845740 - 25845647
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||   ||| || || ||||| ||||||  |||||||| |||||||||| | ||||  ||||||||||| ||||| ||||||||    
T  25845740 gactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctg 25845647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 33388601 - 33388634
Alignment:
Q  134 aattgaagggaagagaaacaaacttcgtcttcaa 167  Q
    ||||||||||||||||| ||||||||||||||||    
T  33388601 aattgaagggaagagaagcaaacttcgtcttcaa 33388634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 6926049 - 6925997
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 159  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  6926049 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 6925997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 16610759 - 16610602
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  16610759 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactattagccaatgcctaaaatggtaaacgg 16610660  T
Q  114 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccac 171  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  16610659 actaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 31706337 - 31706552
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaaca 112  Q
    |||||||||||||||||||||||| ||||| |||||||| |||  | ||||||     |||||||||||||||||||||| ||||| || ||| |||||     
T  31706337 ggacatcagagtcaagaacaatatttacaatagttgcctgaacaaagcataaa-----aacagaaaagaaactcttagcctatgcccaatatggtaaacg 31706431  T
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 212  Q
    ||||||||||||||  ||| ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  31706432 gactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctttaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataac 31706531  T
Q  213 cgggcaatctttgacattaaa 233  Q
    |   |||||||||||||||||    
T  31706532 caaacaatctttgacattaaa 31706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 29651767 - 29651894
Alignment:
Q  74 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 173  Q
    ||||||||||  ||||||| ||||| || ||| ||||| ||||||||||||||  ||||||||||| | |||||||||   ||||||  ||||||||||     
T  29651767 agaaaagaaaaccttagcctatgcccaacatggtaaacggactaagccaccacccatgataattgaggagaagagaaaagtacttcgcattcaaccacga 29651866  T
Q  174 aaaagcaagcgacttaatcttatcgacc 201  Q
    |||||||||| |||||||||| ||||||    
T  29651867 aaaagcaagcaacttaatcttgtcgacc 29651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 704490 - 704642
Alignment:
Q  81 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 180  Q
    ||||| |||||||||||| |  ||| ||||| ||||||| ||||||  |||||||||||| |||||| || ||||||| | ||||||||| | ||||| |    
T  704490 aaacttttagccaatgcccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactttgccttcaaccaagcaaaagta 704589  T
Q  181 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    ||  ||||||||||||| | |||| | |||||||  |||||||| || |||||    
T  704590 agaaacttaatcttatctatcacccgaataaccgaacaatctttaacgttaaa 704642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 30722538 - 30722638
Alignment:
Q  133 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaa 232  Q
    ||||||| |||||||||   | |||||| ||||||||||||||| |||||||||||||| || || ||||||||  |||||| ||| |||||||||||||    
T  30722538 taattgaggggaagagaggaatacttcgccttcaaccacgtaaaggcaagcgacttaatattgtctaccacctgattaaccgagcattctttgacattaa 30722637  T
Q  233 a 233  Q
    |    
T  30722638 a 30722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 27482646 - 27482798
Alignment:
Q  81 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 180  Q
    |||||||||||| ||||| || ||| | ||| |||||||||||||   |||||||||||||||||| | |||  | |||  ||||||||||  ||| ||     
T  27482646 aaactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcg 27482745  T
Q  181 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    || |||||||||||||| |||||||| || |||| ||| |||||  |||||||    
T  27482746 agggacttaatcttatcaaccacctgaattaccgagcattctttatcattaaa 27482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 29994735 - 29994645
Alignment:
Q  88 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaag 178  Q
    ||||||||||||||||   ||||| || ||||||||||   ||||||||||||||||||| ||  |||||||  |||||||||| ||||||    
T  29994735 tagccaatgcctaaaacagtaaacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaag 29994645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 22922506 - 22922550
Alignment:
Q  162 cttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||    
T  22922506 cttcaaccacgtaaaagcaagagacttaatcttctctaccacctg 22922550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 18967970 - 18967864
Alignment:
Q  88 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 187  Q
    ||||||||||| |  || |||||  |||||||||| ||   ||||| ||| || ||||||||| |||| |||| |||||||||| |||||| ||| ||||    
T  18967970 tagccaatgcccagcataataaatggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaaagaaagtgact 18967871  T
Q  188 taatctt 194  Q
    |||||||    
T  18967870 taatctt 18967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 22924159 - 22924208
Alignment:
Q  157 ttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||| |||||||||||||||| |||| ||||||||||| || ||||||||    
T  22924159 ttcgccttcaaccacgtaaaaccaagagacttaatcttctctaccacctg 22924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 19314979 - 19315103
Alignment:
Q  82 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 181  Q
    |||| |||||| |||||||  ||| ||||| | |||||||||||   |||||||||  ||||||   || |||| |||| |||||||||| |||| |  |    
T  19314979 aactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtga 19315078  T
Q  182 gcgacttaatcttatcgaccacctg 206  Q
    | |||||||||||||| ||||||||    
T  19315079 gtgacttaatcttatcaaccacctg 19315103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 21042047 - 21041995
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 159  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  21042047 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 21041995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 22923149 - 22923181
Alignment:
Q  162 cttcaaccacgtaaaagcaagcgacttaatctt 194  Q
    ||||||||||||||||||||| |||||||||||    
T  22923149 cttcaaccacgtaaaagcaagagacttaatctt 22923181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 8090659 - 8090506
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 113  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  8090659 ggacatcagagttaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatggtaaacgg 8090560  T
Q  114 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaa 167  Q
    |||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  8090559 actaagccaccacccatgataattgaagggaagagaaataaactccgtcttcaa 8090506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 40638766 - 40638930
Alignment:
Q  69 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 168  Q
    |||||| |||||||||| |||||| ||| | |||||  ||||| ||||||||||||||  ||| |||||||||||||||||| || |||||  | |||||    
T  40638766 aaaacataaaagaaacttttagcctatgtccaaaatcgtaaacggactaagccaccacccatggtaattgaagggaagagaagcatacttcaacatcaac 40638865  T
Q  169 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    |||||||| | |||||| |||||||| |||||||||||  |||| | ||| ||||||||||||||    
T  40638866 cacgtaaaggtaagcgatttaatcttgtcgaccacctgattaactgagcactctttgacattaaa 40638930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 31640356 - 31640241
Alignment:
Q  88 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 187  Q
    ||||| ||||||| |||  ||||| |||||||||||||   ||| ||||||| |||||||||| |||| |||| ||||||||||||||||||||| ||||    
T  31640356 tagcctatgcctataattgtaaacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgact 31640257  T
Q  188 taatcttatcgaccac 203  Q
    |||||||||| |||||    
T  31640256 taatcttatctaccac 31640241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 20948244 - 20948080
Alignment:
Q  69 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 168  Q
    |||| ||||||||||  ||||||| |  || || ||| ||||| ||||||||||||||  ||| ||||||| | ||||||||  | |||||| |||||||    
T  20948244 aaaaaagaaaagaaaaccttagcctacacccaacatggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttcaac 20948145  T
Q  169 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 233  Q
    |||| ||| ||||||||||||||||| | |||||||||   ||||| ||| |||||| |||||||    
T  20948144 cacgaaaaggcaagcgacttaatcttgttgaccacctgagaaaccgagcagtctttggcattaaa 20948080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 27708189 - 27708286
Alignment:
Q  109 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||| ||||||||||   ||||  |||||||||||||| | |||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27708189 aacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaagcgagcgacttaatcttatcaaccacctg 27708286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 43451330 - 43451281
Alignment:
Q  277 gtgtgcatttgaattagtggaagcgtgtggtacgcacttgtaggatgatg 326  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43451330 gtgtgcatttgaattagtggaagcgtgtggtgcgcacttgtaggatgatg 43451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 44735977 - 44736075
Alignment:
Q  108 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||||| |   |||| ||||||||||||||| |  |||||||| |||||||||| ||||||  || ||||||||||| |||||||||||    
T  44735977 aaacagactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 44736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 27009296 - 27009200
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 203  Q
    ||||| |||||||||||||   ||| ||||||||||||||||||  ||| |||| |||||| ||| ||||||| || |||||||||||||| |||||    
T  27009296 taaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaagcgagagacttaatcttatcaaccac 27009200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 9420722 - 9420795
Alignment:
Q  76 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagaga 149  Q
    ||||||||  ||||||| |||||||||||  ||||| | ||||||||||||  ||||||||||| |||||||||    
T  9420722 aaaagaaaaccttagcctatgcctaaaatagtaaacgggctaagccaccacccatgataattgaggggaagaga 9420795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 45131107 - 45131220
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 186  Q
    |||||||||||| |  ||| ||||  ||||||||||||||  |||||||||||||||||||||| || | |||  |||||||||| | ||||   |||||    
T  45131107 ttagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaagtttgcgac 45131206  T
Q  187 ttaatcttatcgac 200  Q
     ||||||| |||||    
T  45131207 ataatcttgtcgac 45131220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 9840855 - 9840768
Alignment:
Q  116 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 203  Q
    ||||||||||   |||||||||||| ||||||| | |||| || | |||||| ||| ||||||| ||||| ||||||||||| |||||    
T  9840855 taagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataaaagcgagcgatttaatcttatcaaccac 9840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 33645830 - 33645932
Alignment:
Q  100 aaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcga 199  Q
    |||||| | |||||||||| ||||||   ||| |||||||| ||||||| | |||| ||   |||||||||| |||| || ||||||||||||||||| |    
T  33645830 aaaatggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaa 33645929  T
Q  200 cca 202  Q
    |||    
T  33645930 cca 33645932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 21563488 - 21563423
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 194  Q
    ||||||||| || | |||||||||||| || | | ||||||||||||||| ||| |||||||||||    
T  21563488 atgataatttaatgaaagagaaacaaattttgccctcaaccacgtaaaagaaagtgacttaatctt 21563423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 30505838 - 30505717
Alignment:
Q  82 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 181  Q
    |||| |||||| ||||| || ||| |||||||||||| ||||||   |||||||||||||||||| |||  ||| |||  ||||||| |  |||| || |    
T  30505838 aactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaatgcga 30505739  T
Q  182 gcgacttaatcttatcgaccac 203  Q
    |  ||||||||||||| |||||    
T  30505738 gaaacttaatcttatcaaccac 30505717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 52578101 - 52577965
Alignment:
Q  88 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 187  Q
    ||||| ||||||| ||||  ||||  ||||||||||||   ||||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  52578101 tagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggact 52578002  T
Q  188 taatcttatcgaccacctggataaccgggcaatcttt 224  Q
    |||||||||| | |||||| | ||||| |||| ||||    
T  52578001 taatcttatctatcacctgaagaaccgagcaaacttt 52577965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 9831476 - 9831377
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 212  Q
    |||||||||||||   |||||||||||||||||| | ||| || |||| |||||||||| |||||||||| ||||| |||||||| |||||||| |||||    
T  9831476 gactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatccaccacctgaataac 9831377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 30972395 - 30972515
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 212  Q
    |||||||||||||   |||||| |||||||||||||||  ||| |||| ||||| |||| | ||||  ||||||||||| ||||| |||||||| ||||     
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataat 30972494  T
Q  213 cgggcaatctttgacattaaa 233  Q
     | ||| |||||| |||||||    
T  30972495 tgagcactctttgccattaaa 30972515  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 22653385 - 22653286
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||||||||   |||||||||||||| ||   || |||| |||| |||||||||| |||| |  ||||| ||||||||||| ||||||||    
T  22653385 taaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaatcttatcaaccacctg 22653286  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 11131194 - 11131287
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||   ||||||||| ||||||||||  |||||||||  ||||||||||  |||||  ||| |||||||| |||| ||||||||    
T  11131194 gactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaatcctatctaccacctg 11131287  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 19846646 - 19846574
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 159  Q
    |||| ||||||| || ||| ||||| |||||| |||||||  |||||||||||||||||||||| || |||||    
T  19846646 ttagacaatgcccaacatggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttc 19846574  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 43001801 - 43001717
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 197  Q
    ||||||||||||||  ||||||||||||  |||||| |  |||||||| |||||||||| |||| |  || ||||||||||||||    
T  43001801 gactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacataaatgttagtgacttaatcttatc 43001717  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 8830949 - 8831039
Alignment:
Q  116 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||| | ||| ||||||||||||||| ||| ||| |||  ||||||| || ||||||  ||||||||||| || || ||||||||    
T  8830949 taagccaccagtcatggtaattgaagggaagataaagaaatttctccttcaactacataaaagtgagcgacttaattttgtcaaccacctg 8831039  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 25130441 - 25130538
Alignment:
Q  106 ataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 203  Q
    |||||| |||||||||||||   |||||| |||| || ||||| | |||| |||  |||||||||| | ||||| || ||||| ||||||||||||||    
T  25130441 ataaacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccac 25130538  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 48337036 - 48336968
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 197  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  48337036 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 48336968  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 8462514 - 8462613
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||| |||| |||||||||| | || |  || |||||||||||||| ||||||||    
T  8462514 taaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacctg 8462613  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 5752057 - 5751992
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 194  Q
    ||||||||||| |||||||||   | |||||| |||||||||||||||  ||||||||||||||||    
T  5752057 atgataattgaggggaagagaggaatacttcgccttcaaccacgtaaagacaagcgacttaatctt 5751992  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 33282913 - 33282823
Alignment:
Q  107 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 197  Q
    ||||| |||||||||||||   |||||||||||  || |||||| |||| ||   |||||||||| |||||| |||||||||||| |||||    
T  33282913 taaacggactaagccaccaaccatgataattgagagggagagaagcaaatttttccttcaaccacctaaaagtaagcgacttaattttatc 33282823  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 39435484 - 39435582
Alignment:
Q  137 tgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 235  Q
    |||| ||||||||| |||| |||| |||||||||| | ||  | || |||||||||||||| |||||||| | ||||| ||| |||||| |||| ||||    
T  39435484 tgaaaggaagagaagcaaatttcgccttcaaccacatgaactcgagtgacttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaata 39435582  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 37929199 - 37929106
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 206  Q
    |||||||||||||   |||||| || |||||||||| |  ||| |||  |||||||||| |||| || || ||||||||| |||||||||||||    
T  37929199 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 37929106  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 33191210 - 33191270
Alignment:
Q  113 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 173  Q
    |||||||||||||   |||||||||||||||||||| | |||| |||  ||||||||||||    
T  33191210 gactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgt 33191270  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 38738543 - 38738483
Alignment:
Q  87 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaaga 147  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||    
T  38738543 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaaga 38738483  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 19937 - 20009
Alignment:
Q  14 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttag 90  Q
    |||||||||||||||||||||||| ||||| |||||||| ||| || |||     |||||||||||||||||||||||    
T  19937 ggacatcagagtcaagaacaatatttacaatagttgcctgaacagagcat-----aaaaacagaaaagaaactcttag 20009  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 24558 - 24490
Alignment:
Q  129 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 197  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  24558 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 24490  T

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