View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_44 (Length: 321)
Name: NF0342_2D_low_44
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0342_2D_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 15358666 - 15358628
Alignment:
Q |
5 |
acaaagctatcaaggattggctgcttaagcttaaagatg |
43 |
Q |
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T |
15358666 |
acaaagctatcaaggattggctgcttaagcttaaagatg |
15358628 |
T |
 |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 15079185 - 15079129
Alignment:
Q |
184 |
ggaaacaaacttaactcgtttcattaatcaataggggggtaatactaagaggaacat |
240 |
Q |
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T |
15079185 |
ggaaacaaacttaactcatttcattcatcattagggggttaatacaaagaggaacat |
15079129 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 15428309 - 15428346
Alignment:
Q |
6 |
caaagctatcaaggattggctgcttaagcttaaagatg |
43 |
Q |
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T |
15428309 |
caaagctatcaaggattggctacttaagcttaaagatg |
15428346 |
T |
 |
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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 16415385 - 16415352
Alignment:
Q |
9 |
agctatcaaggattggctgcttaagcttaaagat |
42 |
Q |
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|||||||||||||||||||||||||||||||||| |
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T |
16415385 |
agctatcaaggattggctgcttaagcttaaagat |
16415352 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 15348393 - 15348359
Alignment:
Q |
9 |
agctatcaaggattggctgcttaagcttaaagatg |
43 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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|
T |
15348393 |
agctatcaaggattggctgcttaagctcaaagatg |
15348359 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 18688859 - 18688821
Alignment:
Q |
5 |
acaaagctatcaaggattggctgcttaagcttaaagatg |
43 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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|
T |
18688859 |
acaaagctatcaaggattggttgcttaagcttaaagatg |
18688821 |
T |
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