View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_44 (Length: 321)

Name: NF0342_2D_low_44
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_44
NF0342_2D_low_44
[»] chr5 (5 HSPs)
chr5 (5-43)||(15358628-15358666)
chr5 (184-240)||(15079129-15079185)
chr5 (6-43)||(15428309-15428346)
chr5 (9-42)||(16415352-16415385)
chr5 (9-43)||(15348359-15348393)
[»] chr4 (1 HSPs)
chr4 (5-43)||(18688821-18688859)


Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 15358666 - 15358628
Alignment:
5 acaaagctatcaaggattggctgcttaagcttaaagatg 43  Q
    |||||||||||||||||||||||||||||||||||||||    
15358666 acaaagctatcaaggattggctgcttaagcttaaagatg 15358628  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 15079185 - 15079129
Alignment:
184 ggaaacaaacttaactcgtttcattaatcaataggggggtaatactaagaggaacat 240  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||||| |||||||||||    
15079185 ggaaacaaacttaactcatttcattcatcattagggggttaatacaaagaggaacat 15079129  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 15428309 - 15428346
Alignment:
6 caaagctatcaaggattggctgcttaagcttaaagatg 43  Q
    ||||||||||||||||||||| ||||||||||||||||    
15428309 caaagctatcaaggattggctacttaagcttaaagatg 15428346  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 16415385 - 16415352
Alignment:
9 agctatcaaggattggctgcttaagcttaaagat 42  Q
    ||||||||||||||||||||||||||||||||||    
16415385 agctatcaaggattggctgcttaagcttaaagat 16415352  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 15348393 - 15348359
Alignment:
9 agctatcaaggattggctgcttaagcttaaagatg 43  Q
    ||||||||||||||||||||||||||| |||||||    
15348393 agctatcaaggattggctgcttaagctcaaagatg 15348359  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 18688859 - 18688821
Alignment:
5 acaaagctatcaaggattggctgcttaagcttaaagatg 43  Q
    |||||||||||||||||||| ||||||||||||||||||    
18688859 acaaagctatcaaggattggttgcttaagcttaaagatg 18688821  T

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