View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_45 (Length: 320)
Name: NF0342_2D_low_45
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_45 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 38057668 - 38057992
Alignment:
| Q |
1 |
tatatataaccttgaaagnnnnnnngttagggagggagcatgagcttaacaaatggtattctagtattaattttctaatttatatataattaattaattg |
100 |
Q |
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| T |
38057668 |
tatatataaccttgaaagaaaaaaagttagggagggagcatgagcttaacaaatggtattctagtattaattttctaatttatatataattaaataattg |
38057767 |
T |
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| Q |
101 |
atcttttacaagtaagattttatgaatatataatcaattgattttagatttaatggtcaaagtattaattgatctttctatatactgtggtgtcacaaac |
200 |
Q |
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| T |
38057768 |
atcttttacaagtaagattttatgaatatataatcaattgattttagatttaatggtcaaagtattaattgatctttctatatactgtggtgtcacaaac |
38057867 |
T |
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| Q |
201 |
acaaagtccatcctatgattaaaaaacaacaagatcagacgctgctctgtgatagg-taggc----atcaatattatgttgtatgtcctatagtgtaaaa |
295 |
Q |
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| T |
38057868 |
acaaagtccatcctatgattaaaaaacaacaagatcagacgctgctctgtgataggataggcatcgatcaatattatgttgtatgtcctatagtgtaaaa |
38057967 |
T |
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| Q |
296 |
tctcatataatctcaacataaagta |
320 |
Q |
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| T |
38057968 |
tctcatataatctcaacataaagta |
38057992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 38051715 - 38051763
Alignment:
| Q |
223 |
aaaacaacaagatcagacgctgctctgtgata--ggtaggcatcaatat |
269 |
Q |
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|||||||||||||||||||||||| ||||||| | ||||||||||||| |
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| T |
38051715 |
aaaacaacaagatcagacgctgctatgtgatactgataggcatcaatat |
38051763 |
T |
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