View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_2D_low_5 (Length: 910)
Name: NF0342_2D_low_5
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_5 |
 | |
|
| [»] scaffold0144 (3 HSPs) |
| |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
| [»] scaffold0133 (9 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 623; Significance: 0; HSPs: 3)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 44 - 910
Target Start/End: Original strand, 35494 - 36360
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | |||||||| |||||| |||| ||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
35494 |
tgaagagaagtcatggcacccaaacagtctggaaaggatcttagagaaaggaaatgattcagatacaaagattgcagtgaggggatgtcttctaagcttt |
35593 |
T |
|
| Q |
144 |
ctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggatata |
243 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
35594 |
ctagtattttttcatcaccccttgagacaatcagttcacaaagggaagttagattggtcatgttatgtggaaaaacaaactgtggacagcctccaatatt |
35693 |
T |
|
| Q |
244 |
aagtgtcttaagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
35694 |
tagtgtcttaagagaactcaaaccttgcaacaactgctctgataatgactcgatttcattacaccggtcaattgtaagagattctaagccactaagagtg |
35793 |
T |
|
| Q |
344 |
ccgagttcagatgtaccaggtaattccttgagtctggcaaattttaatatgtcaagtgatgtaagattactgttgttaacaatagacttcaataactctt |
443 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||| | |||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35794 |
ccgagttcaaacgtaccaggtaattccatgagtctagaaaatttgcgtatggaaagtgacttaagattactgttgttaacaatggacttcaataactctt |
35893 |
T |
|
| Q |
444 |
catttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaactttaaaagttgtggtagcat |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
35894 |
aatttcctcctttagcagaaagtgatttaacagatggaaggggtggcaatgtaagtttggggacatttgttatatctaaatttaaaagttgtggtagcat |
35993 |
T |
|
| Q |
544 |
ctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttcatag |
643 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35994 |
ctctattccttcgacttccaacaccctctctaaatttggtaagccttccaaagtcaactttttcaatgacgtaagagccttctcagtcgcaggttcatac |
36093 |
T |
|
| Q |
644 |
aaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttac |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36094 |
aaatcatcatcaatgtactttatatctctcattccagatacaaaaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttac |
36193 |
T |
|
| Q |
744 |
agtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgctt |
843 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36194 |
agtcatagagaataatactaactaaaccttttacaatataaatatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaacatgctt |
36293 |
T |
|
| Q |
844 |
aagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaatca |
910 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36294 |
aagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaatca |
36360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 528 - 836
Target Start/End: Complemental strand, 3479 - 3171
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||| | ||||||||| |||||||| || || |||||| | ||||| || | |||||| ||| |
|
|
| T |
3479 |
aaagttgtggtagcatctctaccccttcagctttcaacatcctctctaagtttggtaaaccccgcagagtcaaatacttcaacgaaatgaaagccctctt |
3380 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
| | || |||||| || ||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||| |
|
|
| T |
3379 |
ggaagaagattcatataagtcatcatcaatgtactttaaatctctcattccagatacataaagagtggttaaacaaggtaatttaccaagtggaggaag- |
3281 |
T |
|
| Q |
728 |
tgcctg-cagtttttacagtcatagagaataatactaactaaacctct-tagaatagaagtatttctcatccaacgaggaaattgtgttcccatataacc |
825 |
Q |
| |
|
| ||| ||||||||||||| ||||| |||| | |||| ||||||| | ||||||||||||||||||||| | ||||| ||| |||||| |||| | |
|
|
| T |
3280 |
tcactgacagtttttacagttgtagagtataacatcaact-aacctctccaagatagaagtatttctcatccaatggggaaaatgtattcccacataatc |
3182 |
T |
|
| Q |
826 |
atccaccccaa |
836 |
Q |
| |
|
| |||||||| |
|
|
| T |
3181 |
cttcaccccaa |
3171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 910
Target Start/End: Original strand, 34901 - 34934
Alignment:
| Q |
877 |
tcgctcagcatgaacaccactaacttgtgaatca |
910 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
34901 |
tcgctcagcatgaactccactaacttgtgaatca |
34934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 540; Significance: 0; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 253 - 908
Target Start/End: Original strand, 16656225 - 16656880
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
16656225 |
aagagacctcaaaccttgcaataagtgctctgataatgactcgatttcattacagcagtgaattgtaagagattctaatgcactaagagtgccgaattca |
16656324 |
T |
|
| Q |
353 |
gatgtaccaggtaattccttgagtctggcaaattttaatatgtcaagtgatgtaagattactgttgttaacaatagacttcaataactcttcatttcctc |
452 |
Q |
| |
|
| |||||||||||||| ||||| ||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656325 |
aacgtaccaggtaattcaatgagtttggaaaattcagatatggaaagtgacttaagattactgttgttaacaatagacttcaataactcttcatttcctc |
16656424 |
T |
|
| Q |
453 |
ctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaactttaaaagttgtggtagcatctctactcc |
552 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16656425 |
ctttagcaaaaagtgatttaacagatgcaaggggtggcaatgtaagtttggggacatttcttatatctaaatttaaaagttgtggtagcatctctactcc |
16656524 |
T |
|
| Q |
553 |
ttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttcatagaaatcatca |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16656525 |
ttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttcatacaaatcatca |
16656624 |
T |
|
| Q |
653 |
tcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttacagtcataga |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656625 |
tcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttacagtcataga |
16656724 |
T |
|
| Q |
753 |
gaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgcttaagtcctga |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656725 |
gaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgcttaagtcctga |
16656824 |
T |
|
| Q |
853 |
atggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16656825 |
atggggctcaagagcttcaagtactcgctcagcatgaacaccactaacttttgaat |
16656880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 253 - 910
Target Start/End: Original strand, 16795376 - 16796033
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||| | |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
16795376 |
aagagaactcaaaccttgcaacaactgctctgttaatgactccatttcatcacagccttgaattccaagaaattctaaggcactaagagtgccgagttca |
16795475 |
T |
|
| Q |
353 |
gatgtaccaggtaattccttgagtctggcaaattttaatatgtcaagtgatgtaagattactgttgttaacaatagacttcaataactcttcatttcctc |
452 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16795476 |
gatgtactaggtaattccttgagtctggcaaattttaatatgtaaagtgatttaagattactgttgttaacaatagacttcaataactcttcatttcctc |
16795575 |
T |
|
| Q |
453 |
ctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaactttaaaagttgtggtagcatctctactcc |
552 |
Q |
| |
|
||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16795576 |
cttcagcacaaagtgatttaacagatggaaggggtggcaatgtaagtttgggaacatttcttatatctaactctaaaagttgtggtagcatctctactcc |
16795675 |
T |
|
| Q |
553 |
ttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttcatagaaatcatca |
652 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| | | | || |||||| | |||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16795676 |
ttcaacttccaacaccctctctaaatttggtaggtcatgcagagtcaaatctttcaatgacgtaaaagccttctcggtcgcaggttcatacaaatcatca |
16795775 |
T |
|
| Q |
653 |
tcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttacagtcataga |
752 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
16795776 |
tcaatgtactttaaatcattcattccagatacaaaaagaatatttaaacatggtaatttaccaaataaaggaagctgcctgcagtttttacagtcagaga |
16795875 |
T |
|
| Q |
753 |
gaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgcttaagtcctga |
852 |
Q |
| |
|
||||||||| ||||| | | | ||||||||||||||| |||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
16795876 |
gaataatacgaactagatttttcagaatagaagtatttttcatccaatgaggaaaatctgttcccccataaccatccaccccaacatgcttaagtcctga |
16795975 |
T |
|
| Q |
853 |
atggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaatca |
910 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
16795976 |
atggggctcaagagcttcaagtactcgctcagcatgaactccactaacttgtgcatca |
16796033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 253 - 910
Target Start/End: Complemental strand, 16869939 - 16869282
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||| ||| | |||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
16869939 |
aagagaactcaaaccttgcaacaatttatctgataatgactccatttcatcacaatattcaattcgaagctcttctaaggcactaaaagtgccgagttca |
16869840 |
T |
|
| Q |
353 |
gatgtaccaggtaattccttgagtctggcaaattttaatatgtcaagtgatgtaagattactgttgttaacaatagacttcaataactcttcatttcctc |
452 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
16869839 |
aacgtaccaggtaattccatgagtctggcaaatttggatatgtgaagtgacttaagattactgttgtcaacaatggacttcaataactcttcattgcctc |
16869740 |
T |
|
| Q |
453 |
ctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaactttaaaagttgtggtagcatctctactcc |
552 |
Q |
| |
|
||| |||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16869739 |
cttcagcataaaatgatttaacagatggaaggggtggcaatgtaagtttggggacatttcttatatgtaactttaaaagttgtggtagcatctctactcc |
16869640 |
T |
|
| Q |
553 |
ttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttcatagaaatcatca |
652 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| | | |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
16869639 |
ttcgacttccaacaccctctctaaattcggtaggtcacgcaaagtcatttttttcaatgacgtaaaagccttctcagtcgcaggttcatacatgtcatca |
16869540 |
T |
|
| Q |
653 |
tcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttacagtcataga |
752 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16869539 |
tcaatgtactttaaatcattcattccagatacaaaaagaatatttaaacatggtaatttaccaaatggaggaagctgcctgcagtttttacagtcagaga |
16869440 |
T |
|
| Q |
753 |
gaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgcttaagtcctga |
852 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||| |||||||| ||||||| | ||||||| |||||| |||||||||| |||||||| |||||| |
|
|
| T |
16869439 |
gaataatacgaactaaacctttcagaatagaagtatttttcatccaatgaggaaaatctgttcccccataaccttccaccccaaaatgcttaattcctga |
16869340 |
T |
|
| Q |
853 |
atggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaatca |
910 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
16869339 |
ctggggctcaagagcttcaagtactcgcttagcatgaacaccactaactcttgaatca |
16869282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 428 - 908
Target Start/End: Original strand, 16779553 - 16780033
Alignment:
| Q |
428 |
gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaacttta |
527 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||| | |||||||||| || |||||| |||||| || |||| | |||||| |||||| | |
|
|
| T |
16779553 |
gacttcaataattcttcatttcctccactaacagaaagtgactccacagatggaagggactgcaatgcaagtttagggacatctgttatatgtaacttca |
16779652 |
T |
|
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16779653 |
aaagttggggtagcatctctactccttcgacttccaacaccttctctaaatttggtaagtcacacaaagtcaactttttcaatgacataaaagccttctc |
16779752 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16779753 |
agttgcaggttcatagaagtcatcatcaatgtactttatatctctcattccagatacatgaaggttagttaaacatggtaatttaccaaatggaggaagc |
16779852 |
T |
|
| Q |
728 |
tgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccat |
827 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
16779853 |
tgcctgcagtttttacagccatagaaaataatatgaactaaaccttttagaatagaagtatttctcatccaaggaggaaattgtgttcccataaaactct |
16779952 |
T |
|
| Q |
828 |
ccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
|||||||| | |||||| |||||||| ||||||||||| || | ||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
16779953 |
gcaccccaaaactcttaagacctgaatgaggctcaagagcttccagtactcgctcggcatcaacaccaccaacttgtgaat |
16780033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 414 - 908
Target Start/End: Original strand, 16786330 - 16786826
Alignment:
| Q |
414 |
tgttgttaacaatagacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttct |
513 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||| ||| |||||| |||||| | |||| |||||| || | || |||||| ||||| |||||| | |
|
|
| T |
16786330 |
tgttgtaaaaaatggacttcaataactcttcatttcttccactagcagtaagtgactcaacatatggaagggacgacagtgtaagcttggggacatttat |
16786429 |
T |
|
| Q |
514 |
tatatctaactttaaaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactt--tttcaatg |
611 |
Q |
| |
|
||||| |||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||| | ||||||||| ||| |||| |
|
|
| T |
16786430 |
tatatttaacttcaaaggttgtggcagcatctctactccttcaacttccaacaccctctcgaaatttggtaagttatgcaaagtcaaaaaaatttgaatg |
16786529 |
T |
|
| Q |
612 |
acgtaaaagccttctcagtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaattt |
711 |
Q |
| |
|
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
16786530 |
acataaaagccttctcagtcgcaggttcatacaagtcatcatcaatgtactttatatctctcattttagatacataaagaatagttaaacatggtaattt |
16786629 |
T |
|
| Q |
712 |
accaaatggaggaagctgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgt |
811 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
16786630 |
accaaatggaggaaactgcctgcaatttttacagccatagagaataatactaactaaaccttttagaatagaagtatttctcatccaaagaggaaaatgt |
16786729 |
T |
|
| Q |
812 |
gttcccatataaccatccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16786730 |
attcccccataaccattcaccccaaaatgcttaagacctgaatgaggctcaagagcatccagtactcgctcagcatcaacaccactaacttgtgaat |
16786826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 414 - 908
Target Start/End: Original strand, 17067868 - 17068362
Alignment:
| Q |
414 |
tgttgttaacaatagacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttct |
513 |
Q |
| |
|
|||||| || ||| ||||||| |||||||||||||||||||| | || ||||||| | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17067868 |
tgttgtaaataatggacttcattaactcttcatttcctccttgaacaaaaagtgactcgacagatggaatgggtggcaatgtaagtttggggacatttct |
17067967 |
T |
|
| Q |
514 |
tatatctaactttaaaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgac |
613 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
17067968 |
tatatttaactttaaaagttgtgttagcatctctactcctttgacttttaacaccctctctaaatttggtaagttgcacaaagtcaatttcttcaatgat |
17068067 |
T |
|
| Q |
614 |
gtaaaagccttctcagtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttac |
713 |
Q |
| |
|
||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||| | ||||| | ||| ||||||||||||| |
|
|
| T |
17068068 |
gtaaacgccttgtcagtcgcagattcatacaaatcatcatcaatgtactttatatcgttcaatccagatagagaaagagcagttaagcatggtaatttac |
17068167 |
T |
|
| Q |
714 |
caaatggaggaagctgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgt |
813 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||| ||||||| || |||||||| ||||||| | ||| |
|
|
| T |
17068168 |
caaatggaggaagctgcctgcaatttttacagtcataaagaataatactaactagaccattcagaaaagaagtaattttcatccaatgaggaaaatttgt |
17068267 |
T |
|
| Q |
814 |
tcccatataaccatccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
||| |||||||| |||||||| |||||||||||||||||||| ||||||||| || | |||||||||||||| |||||| | ||||| ||||| |
|
|
| T |
17068268 |
tccaccataaccattcaccccaaaatgcttaagtcctgaatgggactcaagagcttccagtactcgctcagcatcaacaccgccaacttttgaat |
17068362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 429 - 864
Target Start/End: Original strand, 16985837 - 16986272
Alignment:
| Q |
429 |
acttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaactttaa |
528 |
Q |
| |
|
|||| ||||| |||||||||||||||| | | |||||||| | ||||||||||| || ||| ||||||| ||| | | ||| |||||||||||| ||| |
|
|
| T |
16985837 |
acttaaataagtcttcatttcctccttgaaccgaaagtgactcaacagatggaagggatggaaatgtaaatttagaggcttttgttatatctaactctaa |
16985936 |
T |
|
| Q |
529 |
aagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctca |
628 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||| ||||||| ||||| | ||||||||| || ||||| || |||||| |||| ||| |
|
|
| T |
16985937 |
aagttgtgttagcatctctactccttcgacttttaacaccctctttaaattttgtaagttgtacaaagtcaatttcttcaaagatgtaaaaaccttgtca |
16986036 |
T |
|
| Q |
629 |
gtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagct |
728 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||| |||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
16986037 |
gtcgcaggttcatacaaatcatcatcaatgtactttaaatctctcatttcagatataaaaagagtagttaaacatggtaatttaccaaatggaggaagct |
16986136 |
T |
|
| Q |
729 |
gcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatc |
828 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||| | |||||| |||||||| |
|
|
| T |
16986137 |
gcctgcagtttttacagccaaagagaataatactaactagaccttttagaatagaagtatttttcatccaatgaggaaaatctgttccaccataaccatt |
16986236 |
T |
|
| Q |
829 |
caccccaatatgcttaagtcctgaatggggctcaag |
864 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16986237 |
caccccaaaatgcttaagtcctgaatggggctcaag |
16986272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 16870214 - 16870011
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16870214 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaaaggaaattttgcagagacaaactttgtagtgaggggatgccttctaagcttt |
16870115 |
T |
|
| Q |
144 |
ctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggatata |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
16870114 |
ctagtactttttcatcaaccccggagacaatc---------agggaagttagattgttcatgttatgtggaaaaacaaactgtggacagtcgctgatata |
16870024 |
T |
|
| Q |
244 |
aagtgtcttaaga |
256 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16870023 |
aagtgtcttaaga |
16870011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 45 - 256
Target Start/End: Original strand, 16795093 - 16795304
Alignment:
| Q |
45 |
gaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagctttc |
144 |
Q |
| |
|
|||||||||| |||| |||||||| || ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
16795093 |
gaagagaagtgatggcacccaaactatccggcaaggatgttagagaagggaaattagtcagagacaaaatttgtagtgaggggatgccttctaagccttc |
16795192 |
T |
|
| Q |
145 |
tagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggatataa |
244 |
Q |
| |
|
|| || |||||||||| ||||| ||||| ||| | || || |||||||||| ||||||||||||||||||||||||||||||||| | ||||| | |
|
|
| T |
16795193 |
taatattttttcatcacccccgtagacatgcagaacccatagagaagttagatcgttcatgttatgtggaaaaacaaactgtggacagttgatgatatta |
16795292 |
T |
|
| Q |
245 |
agtgtcttaaga |
256 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16795293 |
agtgtcttaaga |
16795304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 16655935 - 16656128
Alignment:
| Q |
35 |
tgtaatgtctgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgcctt |
134 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
16655935 |
tgtaatgtctgaagagaagtgatggcacccaaacagtctggcaaggatgttagtgaaggaaaataatacagagacaaactttgcagtgaggggatgcctt |
16656034 |
T |
|
| Q |
135 |
ctaagctttctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtgg |
228 |
Q |
| |
|
||| || ||||||| ||||||| | | |||| | |||| || |||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
16656035 |
ctatgccatctagtatgttttcattacaatccgagagtaccagtcgacggagggaagttagactgttcatgttatgtggaaaaactaactgtgg |
16656128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 528 - 799
Target Start/End: Original strand, 16842287 - 16842558
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
||||||||| | |||||| |||||||| ||| ||| ||||||||||||||||| || | | ||| |||| || || ||||||| ||||||||||| |
|
|
| T |
16842287 |
aaagttgtgacaacatctccactccttcagctttcaacaccctctctaaatttggcaaatcatgcaacgtcattttctttaatgacggaaaagccttctt |
16842386 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
|||||| |||||| | ||||| ||||||||||||| |||||||||| || ||||||||||| | |||||| ||||||||||||| ||| |||||| |
|
|
| T |
16842387 |
ggtcgcaccttcatacatgtcatcgtcaatgtactttacatctctcattgcatatacataaagagtggttaaacaaggtaatttaccaagtgggggaagc |
16842486 |
T |
|
| Q |
728 |
tgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaa |
799 |
Q |
| |
|
|| ||||||| ||||| |||||| |||| | |||||| ||| || |||||||||||||||||||||| |
|
|
| T |
16842487 |
cgctgacagttttcacagttatagagtataacatcaactaacccttctaaaatagaagtatttctcatccaa |
16842558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 528 - 727
Target Start/End: Complemental strand, 18807884 - 18807685
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||| | ||||||||| |||||||| || || ||| || || |||||||| | ||||||||||| |
|
|
| T |
18807884 |
aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggtaaaccaagcagagttaaattcttcaatgaaatgaaagccttctc |
18807785 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
|| | || |||||| | ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
18807784 |
agatgtagattcatatatgtcatcatcaatgtactttaaatctctcattccaaatacataaagagtggttaaacaaggtaatttaccaagtggaggaagc |
18807685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 16985326 - 16985519
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |||| ||||||||||||||||||| || | |
|
|
| T |
16985326 |
tgaagagaagtcatggcacccaaacagtctggcaaggctgttaccaaaggaaaatccatcagagacaatttttgcagtgaggggatgccttctatgccat |
16985425 |
T |
|
| Q |
144 |
ctagtactttttcatcaaccccgga------gacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggaca |
231 |
Q |
| |
|
|||||| ||||||| | |||| | || | |||| || ||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
16985426 |
ctagtatgttttcattatcccccaaatcccagagatgcagtagacgaagggaagttagactgttcatgttatgtggaaaaacaaattgtggaca |
16985519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 16779058 - 16779270
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| | |||||| ||||| |||| ||||||||| |||| ||||||||||||||||||| || | |
|
|
| T |
16779058 |
tgaagagaagtcatggcacccaaacagtctggcaatgatgttagtgaaggaaaatgatacagagacaatttttgcagtgaggggatgccttctatgccat |
16779157 |
T |
|
| Q |
144 |
ctagtactttttcat--caaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggata |
241 |
Q |
| |
|
|||||| || |||| ||| || ||| | |||| | ||||||||||||| |||||||||||||||||||||| |||||| |||| | | ||||| |
|
|
| T |
16779158 |
ctagtatgttctcattacaattcc--agagtagcagtcggcgaagggaagttagactgttcatgttatgtggaaaaactaactgtagacagtaacggata |
16779255 |
T |
|
| Q |
242 |
taaagtgtcttaaga |
256 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
16779256 |
tgaagtgtctcaaga |
16779270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 727
Target Start/End: Complemental strand, 18874881 - 18874682
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||| | ||||||||| |||||||| || || ||| || || |||||||| | |||||| ||| |
|
|
| T |
18874881 |
aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggtaaaccacacagagttaaattcttcaatgaaatgaaagccctctt |
18874782 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
| | || |||||| | ||||||||||||||||||| |||||| |||||| ||||||||||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
18874781 |
ggatgtagattcatatatgtcatcatcaatgtactttaaatctctgattccacatacataaagagtggttaaacaaggtaatttaccaagtggaggaagc |
18874682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 17067320 - 17067450
Alignment:
| Q |
1 |
tggcagtgaacttaactttggaatgtaccagatttgtaatgtctgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||| || | |||| ||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| |
|
|
| T |
17067320 |
tggcagtgaacttaactttggaaagttaaaaatttctaatgtctgaagagaagtcatggcacccaaccagtctggcaaggatgttactgaaggaaaatag |
17067419 |
T |
|
| Q |
101 |
cgcagagacaaactttgtagtgaggggatgc |
131 |
Q |
| |
|
||||||||| |||| | ||||||||||| |
|
|
| T |
17067420 |
gccagagacaacttttgcaatgaggggatgc |
17067450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 610 - 799
Target Start/End: Original strand, 16837258 - 16837447
Alignment:
| Q |
610 |
tgacgtaaaagccttctcagtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaat |
709 |
Q |
| |
|
||||| ||||||||||| |||||| |||||| | ||||| ||||| ||||||| ||||| |||||||||||||||||| | |||||| |||||| |
|
|
| T |
16837258 |
tgacggaaaagccttcttggtcgcaccttcatacatgtcatcgtcaatatactttacatctcgtattccagatacataaagagtggttaaacaaggtaat |
16837357 |
T |
|
| Q |
710 |
ttaccaaatggaggaagctgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaa |
799 |
Q |
| |
|
||||||| ||| |||||| || ||||||||||||| |||||| |||| | |||||| ||| | ||||||||||||| |||||||| |
|
|
| T |
16837358 |
ttaccaagtgggggaagccgctgacagtttttacagttatagagtataacataaactaacccttccaaaatagaagtatttttcatccaa |
16837447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 16558362 - 16558314
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaag |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16558362 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaag |
16558314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 16785438 - 16785537
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||| ||||||| ||| | ||||| ||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
16785438 |
aagagaactcaaaccttgcaacaattgctccgaaaaggactccatttcatgacaagaatcaatgttaagagattctaaagcaccaagagtaccgagttca |
16785537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 16785159 - 16785208
Alignment:
| Q |
49 |
agaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaat |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
16785159 |
agaagtcatggcacccaaacagtctggcaaggatgttagagaaggaaaat |
16785208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 17067506 - 17067562
Alignment:
| Q |
175 |
cagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggaca |
231 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
17067506 |
cagttgacgaagggaagttagactgttcatgttatgtggaaaaacgaattgtggaca |
17067562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 17096945 - 17096984
Alignment:
| Q |
185 |
agggaagttagattgttcatgttatgtggaaaaacaaact |
224 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17096945 |
agggaagttagactgttcatgttatgtggaaaaacaaact |
17096984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 16779339 - 16779425
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaag |
339 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| ||||||| ||||||| ||| | |||||||||||||||||| |||||||| |
|
|
| T |
16779339 |
aagagagctcaaacattgcaacaagtgctctgaaaatgactccatttcatcacaatatgtaattgtaagagattctaaagcactaag |
16779425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 585
Target Start/End: Complemental strand, 16911760 - 16911703
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaa |
585 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
16911760 |
aaagttgtgatagcatctctactccttcgattctcaacaccctctctaaattaggtaa |
16911703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 428 - 908
Target Start/End: Complemental strand, 38941138 - 38940658
Alignment:
| Q |
428 |
gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaacttta |
527 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||| || | ||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
38941138 |
gacttcaataattcttcatttcctccactagcaaaaaacgactcaacagatggaagggactgcaatgcaagtttggggacatttcttatatctaacttta |
38941039 |
T |
|
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38941038 |
aaagttgtggtagcatctctactccttcgacttccaacaccctctctaaatttggtaagtcacacaaagtcaacttttttaatgacgtaaaagccttctc |
38940939 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
38940938 |
agtcgcaagttcatataagtcatcatcaatgtactttatatctctcattccaaatacaaaaagagtagataaacatggtaatttaccaaatggaggaagc |
38940839 |
T |
|
| Q |
728 |
tgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccat |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
38940838 |
tgcctgcagtttttacagtcatagagaataatactaactagaccttttagaatagaagtatttctcatccaatgaggaaaatgtgttcccatataaccct |
38940739 |
T |
|
| Q |
828 |
ccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
|| ||||| || ||| || |||||||| ||||||||||| || | |||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
38940738 |
gcaacccaaaattcttcagacctgaatgaggctcaagagcttctagtactcgctcagcatcaacactactaacatgtgaat |
38940658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 414 - 908
Target Start/End: Complemental strand, 7055065 - 7054571
Alignment:
| Q |
414 |
tgttgttaacaatagacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttct |
513 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||| |||||||||||| | || |||||||| || |||||||| ||||| || |||| | | |
|
|
| T |
7055065 |
tgttgtaaaaaatggacttcaataactcttcatttcctccacgagcagaaagtgactcaatagatggaagggacggcaatgtgagtttagggacatctgt |
7054966 |
T |
|
| Q |
514 |
tatatctaactttaaaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgac |
613 |
Q |
| |
|
|| |||||| | ||||||||| ||| |||||||||||| || |||||||| |||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
7054965 |
tagatctaagtctaaaagttggtgtaacatctctactccatcaacttccaacaccctctctaaatttggtaagctacacaaagtcaattttttcaatgac |
7054866 |
T |
|
| Q |
614 |
gtaaaagccttctcagtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttac |
713 |
Q |
| |
|
| ||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||| || | ||| || ||||||||||||||||| |
|
|
| T |
7054865 |
gcaaaagccttctcagttgcagggtcatacatgtcatcatcaatgtactttatatctctcattccaactataacaaggttagttaaacatggtaatttac |
7054766 |
T |
|
| Q |
714 |
caaatggaggaagctgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgt |
813 |
Q |
| |
|
||||||| ||||||| ||||||| ||| |||| |||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
7054765 |
caaatgggggaagcttcctgcaggtttcacagccatagagaataatatgaactaagccttttagaatagaagtattgctcatccaacgaggaaaatgtgt |
7054666 |
T |
|
| Q |
814 |
tcccatataaccatccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
|||| ||||||| | || |||| | ||| || |||||||||||||||||||| || | ||||||| || ||| ||| | ||||||||||||| |
|
|
| T |
7054665 |
tcccctataaccgtttacaccaaaactcttgagacctgaatggggctcaagagcttctagtactcgcgcaacatcaacgtccctaacttgtgaat |
7054571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 38941630 - 38941421
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| |||| ||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
38941630 |
tgaagagaagtcatggcacccaaccagtctggcaaggatgttattgaaggaaaatcgaacagacacaaattttgcagtgaggggatgccttctaagctgt |
38941531 |
T |
|
| Q |
144 |
ctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggatata |
243 |
Q |
| |
|
|||||| ||||||| | ||| |||| | |||| || |||||||| ||| |||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
38941530 |
ctagtatgttttcattacccc---agactaccagtcgacggagggaagtcagactgttcatgttatgtggaaaaacgaactgtggacaataattgatacg |
38941434 |
T |
|
| Q |
244 |
aagtgtcttaaga |
256 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
38941433 |
aagtgtctcaaga |
38941421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 7055569 - 7055369
Alignment:
| Q |
30 |
agatttgtaatgtctgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggat |
129 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||| ||||||||| |||| ||||||||||| |
|
|
| T |
7055569 |
agatttgtaatacttgaagagaagtcatggcacccaaccagtccggcaaggatgttagggaaggaaaattgtccagagacaaccttttcagtgaggggat |
7055470 |
T |
|
| Q |
130 |
gccttctaagctttctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtgga |
229 |
Q |
| |
|
||||||| | | ||||||| ||||||| | ||| | || | || || || ||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
7055469 |
accttctatgttgtctagtatgttttcattacacccccaaactaccaattgacgaagggaagttagactgttcatgttatgcggaaaaacgaactgtgga |
7055370 |
T |
|
| Q |
230 |
c |
230 |
Q |
| |
|
| |
|
|
| T |
7055369 |
c |
7055369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 38943173 - 38943254
Alignment:
| Q |
175 |
cagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggatataaagtgtcttaaga |
256 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||||||||||| ||| ||||||||| |||||| | |||||||| |||| |
|
|
| T |
38943173 |
cagttgacaaagggaagttagactgctcatgttatgtggaaaaacgaacagtggacaatgatggattttaagtgtctcaaga |
38943254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 38942989 - 38943085
Alignment:
| Q |
2 |
ggcagtgaacttaactttggaatgtaccagatttgtaatgtctgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaat |
98 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||| | |||||||||||||||| |||||| ||||| ||||||| || ||| ||||| |||| |
|
|
| T |
38942989 |
ggcagtgaacttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggcaaggatgctagcgaaggaaaat |
38943085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 428 - 908
Target Start/End: Original strand, 7536 - 8016
Alignment:
| Q |
428 |
gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaacttta |
527 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||| | |||||||||| || |||||| |||||| || |||| | ||||||||||||| | |
|
|
| T |
7536 |
gacttcaataattcttcatttcctccactaacagaaagtgactccacagatggaagggactgcaatgcaagtttagggacatctgttatatctaacttca |
7635 |
T |
|
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7636 |
aaagttgtggtagcatctctactccttcggcttccaacaccctctctaaatttggtaaatcggacaaagtcaactttttcaatgatgtaaaagccttctc |
7735 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||| |||| |||||||||| ||||||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
7736 |
agtcgcaggttcatgtaagtcattatcaatgtactttaaatctttcattccagacacataaagataagttaaacatggtaatttaccaaatagaggaagc |
7835 |
T |
|
| Q |
728 |
tgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccat |
827 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| | |
|
|
| T |
7836 |
tgcctgacgtttttacagtcatagagaataatatgaactaaaccttttagaatagaagtatttctcatccaaggaggaaattgtgttcctgtataaccct |
7935 |
T |
|
| Q |
828 |
ccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
|||||||| | |||||| |||||||| ||||||||||| || | ||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
7936 |
gcaccccaaaactcttaagacctgaatgaggctcaagagcttctagtactcgctcggcatcaacactactaacctgtgaat |
8016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 7322 - 7371
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcat |
302 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
7322 |
aagagacctcaaaccttgcaacaagtgctctgataatgactccatttcat |
7371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 242; Significance: 1e-133; HSPs: 9)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 428 - 908
Target Start/End: Original strand, 6856 - 7339
Alignment:
| Q |
428 |
gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaacttta |
527 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| | ||||||| ||| || || ||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
6856 |
gacttcaataattcttcatttcctccactagcagaaagtgactcaacagatagaagggatgtcaatgtaagtttggggacatttgttatatctaaattta |
6955 |
T |
|
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| | | |||| |||| ||||||| |||||||||||| ||||| |
|
|
| T |
6956 |
aaagttgtggtagcatctctactccatcaacttccaacaccctctctaaatttggtaagtcatgcaaactcaattttttcagtgacgtaaaagctttctc |
7055 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
|||| |||||||||| || |||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
7056 |
agtctcaggttcatacaagtcatcatcaatgtactttatatatctcattccagataaatagagaatagttaaacatggtaatttaccaaacggaggaaga |
7155 |
T |
|
| Q |
728 |
tgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccat |
827 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||| |||||||| |
|
|
| T |
7156 |
tgcctacaatttttacagttatagagaataatactaactaaaccttttagaatagaagtatttttcatccaagaaggaaaaattgttccaccataaccat |
7255 |
T |
|
| Q |
828 |
ccaccccaatatgcttaagtcc---tgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||| || | ||||||||| |||| ||||| | ||||||||||| |
|
|
| T |
7256 |
tcaccccaaaatgcttcagtccggaggaatggggctcaagagcttccagtactcgctcggcatcaacactgccaacttgtgaat |
7339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 414 - 908
Target Start/End: Original strand, 11217 - 11711
Alignment:
| Q |
414 |
tgttgttaacaatagacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttct |
513 |
Q |
| |
|
|||||| || ||| ||||||||||| ||||||||||||| ||||| ||||||| | | |||||||| || |||||| |||||| || |||| | | |
|
|
| T |
11217 |
tgttgtaaaaaatggacttcaataattcttcatttcctcgactagcataaagtgactccatagatggaagggactgcaatgcaagtttagggacatctgt |
11316 |
T |
|
| Q |
514 |
tatatctaactttaaaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgac |
613 |
Q |
| |
|
|||| ||||||| ||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||| || ||||||| |||| |
|
|
| T |
11317 |
tatagctaacttcaaaagctgttgtagcatctctactccttcgactttcaacaccctctctaaatttggtaagtcagccaaagtaaattttttcagtgac |
11416 |
T |
|
| Q |
614 |
gtaaaagccttctcagtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttac |
713 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| |||| | | ||| ||||||||||||| |
|
|
| T |
11417 |
gtaaaagccttctcagtcgtaggttcatacaaactatcatcaatgtactttaaatctctcattctagatacagaaaggaaagttaagcatggtaatttac |
11516 |
T |
|
| Q |
714 |
caaatggaggaagctgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgt |
813 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11517 |
caaatggaggaatctgcctgcagtttttacagtcatagagaataatactaactagaccttttagaatagaagtatttctcatccaatgaggaaaatgtgc |
11616 |
T |
|
| Q |
814 |
tcccatataaccatccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
|||||||||||| | || ||||| | ||| || |||||||| |||||||||| || | |||| |||||||||||| || |||||||||||||| |
|
|
| T |
11617 |
tcccatataaccctgcaacccaaaactctttagacctgaatgaggctcaagagtttctattacttgctcagcatgaatactactaacttgtgaat |
11711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 549 - 908
Target Start/End: Original strand, 16552 - 16911
Alignment:
| Q |
549 |
ctccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctcagtcgcaggttcatagaaatc |
648 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16552 |
ctccttcgacttccaacaccttctctaaatttggtaagtcccacaaaaccaacttttttaatgacgtaaaagccttctcagtcgcaggttcatagaagtc |
16651 |
T |
|
| Q |
649 |
atcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagctgcctgcagtttttacagtca |
748 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16652 |
atcatcaatgtactttatatctctcattccagatacataaagattagttaaatatggtaatttaccaaatggaggaagttgcctgcagtttttacagtca |
16751 |
T |
|
| Q |
749 |
tagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgcttaagtc |
848 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| | |||||| | |
|
|
| T |
16752 |
tagagaataatatgaactaaaccatttagaatagaagtatttctcatccaaggaggaaattgtgttcccatataacactgcaccccaaaactcttaagac |
16851 |
T |
|
| Q |
849 |
ctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
||||||| || |||||||| || | |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
16852 |
ctgaatgaggttcaagagcttctagtactcgctcagcatcaagaccaccaacttgtgaat |
16911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 15953 - 16165
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| || ||||| ||| |||||||||||| | ||||||||||||||||||| || | |
|
|
| T |
15953 |
tgaagagaagtcatggcacccaaacagtctggcaaggatgtcagtgaaggaaaaccgaacagagacaaactgcgcagtgaggggatgccttctatgccat |
16052 |
T |
|
| Q |
144 |
ctagtactttttcat--caaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggata |
241 |
Q |
| |
|
|||||| || |||| ||| ||| ||| | |||| | ||||||||||||| |||||||||||||||||||||||||||||||||| | | |||| |
|
|
| T |
16053 |
ctagtatgttctcattacaatcccagagt--agcagtcggcgaagggaagttagactgttcatgttatgtggaaaaacaaactgtggacagtaactgata |
16150 |
T |
|
| Q |
242 |
taaagtgtcttaaga |
256 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
16151 |
tgaagtgtctcaaga |
16165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 10742 - 10919
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| | ||| | |||| |||| |||| |||| ||||||||||||||||||| || | |
|
|
| T |
10742 |
tgaagagaagtcatggcacccaaacagtctggcaaggatgttcgtgaatgaaaatcaaacagacacaatcttttcagtgaggggatgccttctatgccat |
10841 |
T |
|
| Q |
144 |
ctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaa |
221 |
Q |
| |
|
|||||| ||||||| | | |||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10842 |
ctagtatgttttcattacaatccgagagtcgcagttcacggagggaagttagactgttcatgttatgtggaaaaacaa |
10919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 6382 - 6594
Alignment:
| Q |
44 |
tgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatttcgcagagacaaactttgtagtgaggggatgccttctaagcttt |
143 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||| | ||| ||| || ||||| ||| ||| |||||||||||||||||||||||| || | |
|
|
| T |
6382 |
tgaagagaagtcatggcacccaaccagtccggcaaggattttatagatggaaaattgaacagtctcaatttttgtagtgaggggatgccttctatgccat |
6481 |
T |
|
| Q |
144 |
ctagtactttttcatcaaccccggagacaatcagttcacaaagggaagttagattgttcatgttatgtggaaaaacaaactgtggacaatcatggatata |
243 |
Q |
| |
|
|||||| |||||| | | | || | ||||| || ||||||| |||| |||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
6482 |
ctagtatgctttcattacactccacgagtagcagttgacggagggaagctagactgttcatgttatgtggaaaaactaactgtggacaataatagatatg |
6581 |
T |
|
| Q |
244 |
aagtgtcttaaga |
256 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
6582 |
aagtgtctcaaga |
6594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 11023 - 11122
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| | ||||| ||| | |||||| ||||| ||||||| ||||||||||| | ||||||| |
|
|
| T |
11023 |
aagagaactcaaaccttgcaacaagtgctctgaaaatgactccaattcatcacataaatcaattctaagaaattctaatgcactaagagtactgagttca |
11122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 6663 - 6762
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
||||||||||||||||| |||||| ||||| || ||||||| |||||||| || | ||||| | |||||||||||| ||| |||||| ||||||||| |
|
|
| T |
6663 |
aagagaactcaaacctttcaacaagtgctccgaaaatgactccatttcattgcaacgttcaatagaaagagattctaaagcagtaagaggaccgagttca |
6762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 525
Target Start/End: Original strand, 16448 - 16545
Alignment:
| Q |
428 |
gacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttcttatatctaactt |
525 |
Q |
| |
|
||||||||||| |||||| ||||||| || || ||||||| | ||||||||||| || |||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
16448 |
gacttcaataattcttcacttcctccactaacaaaaagtgactcaacagatggaagggactgcaacacaagtttggcaacatttgttatatctaactt |
16545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 7e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 414 - 907
Target Start/End: Original strand, 13376454 - 13376947
Alignment:
| Q |
414 |
tgttgttaacaatagacttcaataactcttcatttcctcctttagcagaaagtgatttaacagatggaatgggtggcaatgtaagtttgggaacatttct |
513 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| || || |||| | | ||||||||||| || | ||||| |||||| || ||| | |
|
|
| T |
13376454 |
tgttgttaaaaatggacttcaataactcttcatttcctccggtaacaaaaaggaactcaacagatggaagggacgacaatgcaagttttgggacacattc |
13376553 |
T |
|
| Q |
514 |
tatatctaactttaaaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgac |
613 |
Q |
| |
|
|||| ||| | ||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
13376554 |
tatacttaagaatgaaagttggggtagcatctccactccttcaacttccaacaccctctctaaatttggtaagttacgtaacgtcaattttttcaatgac |
13376653 |
T |
|
| Q |
614 |
gtaaaagccttctcagtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttac |
713 |
Q |
| |
|
| |||||||||||| | ||||||||||| || ||||| ||||||||||||| || ||||||||||||| | | ||| || |||||| |||||||||| |
|
|
| T |
13376654 |
gcaaaagccttctcggatgcaggttcatataagtcatcttcaatgtactttaaattcctcattccagataaaaagagagtagttaaacacggtaatttac |
13376753 |
T |
|
| Q |
714 |
caaatggaggaagctgcctgcagtttttacagtcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgt |
813 |
Q |
| |
|
||| ||| | ||| ||| ||||||||||||| |||||||||||||||| |||||| | | |||||| ||||||||| ||||||||| ||||||| ||| | |
|
|
| T |
13376754 |
caagtggggaaagttgcttgcagtttttacaatcatagagaataatacaaactaagctttttagaaaagaagtattcctcatccaaggaggaaaatgtat |
13376853 |
T |
|
| Q |
814 |
tcccatataaccatccaccccaatatgcttaagtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaa |
907 |
Q |
| |
|
|||| ||| | | || ||||| |||||| |||||||||||||||||||| || | ||||||||||||| ||||| ||||||||||| |
|
|
| T |
13376854 |
tcccccgtaatccttcatcccaaatctcttaagacctgaatggggctcaagagcctccagcactcgctcagcatcaacacttgtaacttgtgaa |
13376947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 13376245 - 13376370
Alignment:
| Q |
253 |
aagagaactcaaaccttgcaacaattgctctgataatgacttgatttcattacagcagtcaattgtaagagattctaaggcactaagagtgccgagttca |
352 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| ||||||| ||| || | ||| |||| |||||||| ||| |||||||||||||| |
|
|
| T |
13376245 |
aagagaactcaaaccttgcaacaagtgctctgaaaatgactcaatttcatcacaacattgaatgtgaagaacttctaaggtacttagagtgccgagttc- |
13376343 |
T |
|
| Q |
353 |
gatgtaccaggtaattccttgagtctggcaaa |
384 |
Q |
| |
|
| ||||||||||||||||| ||||||| |
|
|
| T |
13376344 |
-----atcaggtaattccttgagtttggcaaa |
13376370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 13375951 - 13376019
Alignment:
| Q |
31 |
gatttgtaatgtctgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaatt |
99 |
Q |
| |
|
||||| |||| | ||||||| |||||||| |||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
13375951 |
gatttttaatctttgaagagtagtcatggcacccaaccagtctggcaaggatgttagagaaggaaaatt |
13376019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 746 - 908
Target Start/End: Original strand, 20153141 - 20153302
Alignment:
| Q |
746 |
tcatagagaataatactaactaaacctcttagaatagaagtatttctcatccaacgaggaaattgtgttcccatataaccatccaccccaatatgcttaa |
845 |
Q |
| |
|
|||||||||||||| || |||| |||| |||||||||||||||||||||||||| ||||||| | ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
20153141 |
tcatagagaataat-ctgactagaccttttagaatagaagtatttctcatccaaggaggaaaatctgttcccccataaccattcaccccaaaatgcttaa |
20153239 |
T |
|
| Q |
846 |
gtcctgaatggggctcaagagcatcaaatactcgctcagcatgaacaccactaacttgtgaat |
908 |
Q |
| |
|
||| |||||||||||||||||| || | ||||||||| | || ||||||| ||||||||||| |
|
|
| T |
20153240 |
gtcatgaatggggctcaagagcttccagtactcgctcggaatcaacaccatcaacttgtgaat |
20153302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 20152928 - 20152995
Alignment:
| Q |
31 |
gatttgtaatgtctgaagagaagtcatggtacccaaacagtctggcaaggctgttagagaagggaaat |
98 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||| ||| |||||||| |||||| ||||| |||| |
|
|
| T |
20152928 |
gatttctaatttttgaagagaagtcatggcacccaaatagtttggcaaggatgttagtgaaggaaaat |
20152995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 528 - 727
Target Start/End: Original strand, 7823 - 8022
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||| | ||||||||| |||||||| || || ||| || || |||||||| | |||||||||| |
|
|
| T |
7823 |
aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggtaaaccaagcagagttaaattcttcaatgaaatgaaagccttctt |
7922 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggaggaagc |
727 |
Q |
| |
|
|| | || || ||| | |||| |||||||||||||| ||||||||||||| ||||||||||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
7923 |
agatgtagatttatatatgtcattatcaatgtactttaaatctctcattccaaatacataaagagtggttaaacaaggtaatttaccaagtggaggaagc |
8022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 723
Target Start/End: Original strand, 3142 - 3337
Alignment:
| Q |
528 |
aaagttgtggtagcatctctactccttcgacttccaaaaccctctctaaatttggtaagcctttcaaagtcaactttttcaatgacgtaaaagccttctc |
627 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||| | ||||||||| |||||||| | | || ||| || || |||||||| | |||||| ||| |
|
|
| T |
3142 |
aaagttgtggtagcatctctacgccttcagctttcaacatcctctctaagtttggtaaatcatgcagagttaaattcttcaatgaaatgaaagccctctt |
3241 |
T |
|
| Q |
628 |
agtcgcaggttcatagaaatcatcatcaatgtactttatatctctcattccagatacataaagaatatctaaacatggtaatttaccaaatggagg |
723 |
Q |
| |
|
| | || |||||| | ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||| ||||||||||||| |||||| |
|
|
| T |
3242 |
ggatgtagattcatatatgtcatcatcaatgtactttaaatctctcattccatatacataaagagtggttaaacaaggtaatttaccaactggagg |
3337 |
T |
|
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