View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_55 (Length: 303)
Name: NF0342_2D_low_55
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 10254772 - 10255024
Alignment:
| Q |
17 |
acaagccacctgtagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagttgaggggcctcctgtttacaagcctcc |
116 |
Q |
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| T |
10254772 |
acaagccacctgtagagaaacctcctttttacaagcctccgtttgagaatccaccattttatatacctccagttgaggagcctcctgtttacaagcctcc |
10254871 |
T |
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| Q |
117 |
attcgagaagccaccgatttacactcctccattctagagcccaacttaccacccaaagttccctcgggcaggcgatggtactcgttaatagaacatgcta |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254872 |
attcgagaagccaccaatttacactcctccattctagagcccaccttaccacccaaagttccctcgggcaggcgatggtactcgttaatagaacatgcta |
10254971 |
T |
|
| Q |
217 |
tgaagaaaatatgttaaataagag----atagagttttctatttaatcaagga |
265 |
Q |
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| T |
10254972 |
tgaagaaaatatgttaaataagagatatatagagttttttatttaatcaagga |
10255024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 264
Target Start/End: Original strand, 10284206 - 10284365
Alignment:
| Q |
107 |
acaagcctccattcgagaagccaccgatttacactcctccattctagagcccaacttaccacccaaagttccctcgggcaggcgatggtactcgttaata |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| | |||||||| | ||||||||| |||||||||| || || |
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| T |
10284206 |
acaagcctccattcgagaagccaccgatttacacacctccattctagatgccaccttagctcccaaagtcctctcgggcagaggatggtactcttttcta |
10284305 |
T |
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| Q |
207 |
gaacatgctatgaagaaaatatgttaaataagag--atagagttttctatttaatcaagg |
264 |
Q |
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| T |
10284306 |
gaacatgctatgaagaaaatatgttgaataagagatatatagttttctaattaatcaagg |
10284365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 10265122 - 10265359
Alignment:
| Q |
29 |
tagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagttgaggggcctcctgtttacaagcctccattcgagaagcc |
128 |
Q |
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||||||| ||||| || ||||||| ||| ||||||| ||||| | || || || ||| ||||| ||| || ||| |||||||||||||||||||||| |
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| T |
10265122 |
tagagaagcctccagtgcacaagccaccggttgagaaaccacctgtatacaagccaccaattgagaagcccccagttcacaagcctccattcgagaagcc |
10265221 |
T |
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| Q |
129 |
accgatttacactcctccattctagagcccaacttaccacccaaagttccctcgggcaggcgatggtactcgttaatagaacatgctatgaagaaaatat |
228 |
Q |
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| T |
10265222 |
accgatttacacacctccattctagatgccaccttagctcccaaagtcctctcgggcagacgatggtactcttttctataacatggtatgaagaaaatat |
10265321 |
T |
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| Q |
229 |
gttaaataagagata--gagttttctatttaatcaagg |
264 |
Q |
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||| ||||||||||| ||||||||| |||||||||| |
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| T |
10265322 |
gttgaataagagatatttagttttctaattaatcaagg |
10265359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 10254534 - 10254628
Alignment:
| Q |
19 |
aagccacctgtagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagttgaggggcctcctgtttacaagcc |
113 |
Q |
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| T |
10254534 |
aagccacctgtagagaaaccaccagtgtacaagccaccggttgagaagcccccaatttacaaaccaccagttgagaagcctccagtgtacaagcc |
10254628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 10264810 - 10264924
Alignment:
| Q |
17 |
acaagccacctgtagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagttgaggggcctcctgtttacaagcctcc |
116 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| || ||||||| || ||| || | ||||||||||| ||| |||||| ||| |||| |||| |
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| T |
10264810 |
acaagccacctgtagagaaacctccggtgtacaagccaccagttgagaagcccccagttcacaaacctccagtagagaagcctccagttcacaaacctca |
10264909 |
T |
|
| Q |
117 |
attcgagaagccacc |
131 |
Q |
| |
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| | ||||||||||| |
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| T |
10264910 |
agtggagaagccacc |
10264924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 10217566 - 10217674
Alignment:
| Q |
17 |
acaagccacctgtagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagttgaggggcctcctgtttacaagcctcc |
116 |
Q |
| |
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|||||||||| ||||||||||| || |||||||||| || ||||||| || ||| ||||||| || ||||||||| ||| ||||| |||||||| || |
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| T |
10217566 |
acaagccaccagtagagaaaccaccagtgtacaagccacctgttgagaagcctccagtttataagccaccagttgagaagccacctgtgtacaagccccc |
10217665 |
T |
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| Q |
117 |
attcgagaa |
125 |
Q |
| |
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| T |
10217666 |
agtcgagaa |
10217674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10264660 - 10264732
Alignment:
| Q |
17 |
acaagccacctgtagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagt |
89 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| || ||||||| || ||| |||| ||||||||||| |
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| T |
10264660 |
acaagccacctgtagagaaacctccggtgtacaagccacctgttgagaagcccccagtttacaaacctccagt |
10264732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 10217746 - 10217860
Alignment:
| Q |
17 |
acaagccacctgtagagaaacctcctttgtacaagcctccgtttgagaatccaccattttataaacctccagttgaggggcctcctgtttacaagcctcc |
116 |
Q |
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|||||||||| |||||||| || ||| |||||||||||||| | | || || ||| || | |||||||||||| | ||| || |||||||||||||| |
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| T |
10217746 |
acaagccaccagtagagaagccacctgtgtacaagcctccggtctacaaacccccagttgagaaacctccagtttacaagccaccggtttacaagcctcc |
10217845 |
T |
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| Q |
117 |
attcgagaagccacc |
131 |
Q |
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| T |
10217846 |
agtcgagaagccacc |
10217860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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