View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_59 (Length: 284)
Name: NF0342_2D_low_59
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0342_2D_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 15775331 - 15775049
Alignment:
Q |
1 |
aaaaacaagcatatggtcaaaatctttattgtttgttgaatatgccaagcataaaatgtaatttcaagaactcttggttcgtatgagaaggaactaaatt |
100 |
Q |
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T |
15775331 |
aaaaacaagcatatgatcaaaatctttattgtttcttaaatatgccaagcataaaatgtaacttcaagaactcttggttcgaatgagaaggaactaaatt |
15775232 |
T |
 |
Q |
101 |
actataaaatgatgagatgagactaaataataaagaaagagagacgttctttgtatttttccaatgaaataaatgcttgtctccatctccattttttcct |
200 |
Q |
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T |
15775231 |
actataaaatgatgagatgagactaaataataaggaaagagagacgttctttgtatttttccaatggaataaatgcttgtctccatctccattttttcct |
15775132 |
T |
 |
Q |
201 |
agctacccatttg------------gataacttcgagaataatatgtaaaacaacattggtaaaaattgagaagtttgatgtc |
271 |
Q |
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T |
15775131 |
agctacccatttggatatagtctttgataacttcgagaataatatgtaaaacaacattgataaaaattgagaagtttgatgtc |
15775049 |
T |
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