View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_59 (Length: 284)

Name: NF0342_2D_low_59
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_59
NF0342_2D_low_59
[»] chr2 (1 HSPs)
chr2 (1-271)||(15775049-15775331)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 15775331 - 15775049
Alignment:
1 aaaaacaagcatatggtcaaaatctttattgtttgttgaatatgccaagcataaaatgtaatttcaagaactcttggttcgtatgagaaggaactaaatt 100  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
15775331 aaaaacaagcatatgatcaaaatctttattgtttcttaaatatgccaagcataaaatgtaacttcaagaactcttggttcgaatgagaaggaactaaatt 15775232  T
101 actataaaatgatgagatgagactaaataataaagaaagagagacgttctttgtatttttccaatgaaataaatgcttgtctccatctccattttttcct 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
15775231 actataaaatgatgagatgagactaaataataaggaaagagagacgttctttgtatttttccaatggaataaatgcttgtctccatctccattttttcct 15775132  T
201 agctacccatttg------------gataacttcgagaataatatgtaaaacaacattggtaaaaattgagaagtttgatgtc 271  Q
    |||||||||||||            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
15775131 agctacccatttggatatagtctttgataacttcgagaataatatgtaaaacaacattgataaaaattgagaagtttgatgtc 15775049  T

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