View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_6 (Length: 831)
Name: NF0342_2D_low_6
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 2 - 591
Target Start/End: Original strand, 13651344 - 13651936
Alignment:
| Q |
2 |
acaaacactataaaatgctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgtagaaaaatggaaacaccgcatgtgttaatc |
101 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13651344 |
acaaacactataaaaagctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgttgaaaaatggaaacaccgcatgtgttaatc |
13651443 |
T |
|
| Q |
102 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgagtaca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13651444 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaataca |
13651543 |
T |
|
| Q |
202 |
tccacaacagactcattaatttgaat---gatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattttcaaaataa |
298 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651544 |
tccacaacagactcattagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattttcaaaataa |
13651643 |
T |
|
| Q |
299 |
ggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttctttgagagacattgttgtctctgagaaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13651644 |
ggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttctttgagagacattattgtctctgagaaa |
13651743 |
T |
|
| Q |
399 |
ataagttgcattattttagatggaggttttggtgaccttgctactgatttggccgctgaatttgggatacagttgatacattttcgtactgttgctgcta |
498 |
Q |
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| T |
13651744 |
ataagttgcattattttagatggaggttttggtgaccttgctactgatttggctgctgaatttgggatacagttgatacattttcgtactgttgctgcta |
13651843 |
T |
|
| Q |
499 |
gtaccgtctggatttatttctgtatgcccaaactcttggaatgcaacgagattcccattagaggtatactacccactctgaaactgctcttag |
591 |
Q |
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| T |
13651844 |
gtaccgtctggatttatttctgtatgcccaaactcttggactgcaacgagattcccattagaggtatactacccactctgaaactgctcttag |
13651936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 90 - 488
Target Start/End: Original strand, 13656680 - 13657078
Alignment:
| Q |
90 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
189 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | |||| || || || | |
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| T |
13656680 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcacttttctca |
13656779 |
T |
|
| Q |
190 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattt |
289 |
Q |
| |
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| T |
13656780 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagaccatctctgattt |
13656879 |
T |
|
| Q |
290 |
tcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttctttgagagacattgttgtc |
389 |
Q |
| |
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||| | | ||||||| |||||||||||||||||||| | | |||||||||| || | | | ||||||||||||||| |||| ||| || ||||| |
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| T |
13656880 |
tcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcactgagtttgtatggtaagcctttgttgaaagatataattgtc |
13656979 |
T |
|
| Q |
390 |
tctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttggccgctgaatttgggatacagttgatacattttcgtact |
488 |
Q |
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|| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||| |
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| T |
13656980 |
tccgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttgggatacaattgattcattttcgtact |
13657078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 90 - 488
Target Start/End: Original strand, 13646354 - 13646752
Alignment:
| Q |
90 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
189 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | |||| || ||||| | |
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| T |
13646354 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctca |
13646453 |
T |
|
| Q |
190 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattt |
289 |
Q |
| |
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|||| | |||||||| ||| ||||||| | || ||||||||| || || | ||| | |||||||||||||||||||||||||||| ||||||||||| |
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| T |
13646454 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattt |
13646553 |
T |
|
| Q |
290 |
tcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttctttgagagacattgttgtc |
389 |
Q |
| |
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||| | | | ||||||||||||||||||||||||| || | ||||||||| | || | | | ||||||||||||||| |||| ||| || ||||| |
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| T |
13646554 |
tcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcactgagtttgtatggtaagcctttgttgaaagatataattgtc |
13646653 |
T |
|
| Q |
390 |
tctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttggccgctgaatttgggatacagttgatacattttcgtact |
488 |
Q |
| |
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|| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||| |
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| T |
13646654 |
tccgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattttcgtact |
13646752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 741 - 831
Target Start/End: Original strand, 13652129 - 13652213
Alignment:
| Q |
741 |
acataatgaatatgaaacacttctaaagtgaatgttatagatgaacatcttgtacttgtacgtatagacccctttggattggcttagctta |
831 |
Q |
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| T |
13652129 |
acataatgaatgtaaaacacttctaaagtgaatgttagagatgaacat------cttgtacgtatagatccgtttggattgacttagctta |
13652213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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