View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_60 (Length: 271)
Name: NF0342_2D_low_60
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_60 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 6968601 - 6968331
Alignment:
| Q |
1 |
tcacctcctcatttttctcctctttttctttgtcattctcagaatctgtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6968601 |
tcacctcctcatttttctcctctttttctttgtcattctccgaatctgtcttcctctgaccggtaagatcaagcgaacaatcaatatcttctataacaac |
6968502 |
T |
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| Q |
101 |
aactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattggttaactcaatgtcataaatatcatacttcaaaaaatta |
200 |
Q |
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| T |
6968501 |
aactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattggttaactcaatgtcataaatatcatacttcaaaaaatta |
6968402 |
T |
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| Q |
201 |
gcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaagg |
271 |
Q |
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| T |
6968401 |
gcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaagg |
6968331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 1000533 - 1000642
Alignment:
| Q |
163 |
ttaactcaatgtcataaatatcatacttcaaaaaa-ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctc |
261 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
1000533 |
ttaactcaatgtcataaatatcatacttcaaaaaaattagaaatggcagtaactagtgatgattttcctgttcctggaggaccatagaacaaatagccta |
1000632 |
T |
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| Q |
262 |
tcttccaagg |
271 |
Q |
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|||||||||| |
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| T |
1000633 |
tcttccaagg |
1000642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 2177906 - 2177799
Alignment:
| Q |
34 |
cattctcagaatctgtcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagttt |
133 |
Q |
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| T |
2177906 |
cattctcagaacctgtcttcctttaacctgtaagatcaagcaaagaatcaatagcttcaataacaacaaccgattcacttttgattccaatcaaaagttt |
2177807 |
T |
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| Q |
134 |
ccttaact |
141 |
Q |
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|||||||| |
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| T |
2177806 |
ccttaact |
2177799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 270
Target Start/End: Complemental strand, 44396278 - 44396057
Alignment:
| Q |
49 |
tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcatt |
148 |
Q |
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||||||| ||||| |||||||||||||||||||| || ||||| ||||||| || ||||||||| || | |||||||||| ||||| ||||||| ||| |
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| T |
44396278 |
tcttcctttgacctgtaagatcaagtgaacaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtatt |
44396179 |
T |
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| Q |
149 |
atttttcacattggttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataa |
248 |
Q |
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| T |
44396178 |
atccttcactgctgttaactctaaatcataaacatcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaa |
44396079 |
T |
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| Q |
249 |
agcaaatagcctctcttccaag |
270 |
Q |
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| T |
44396078 |
agtaaataaccccttttccaag |
44396057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 53395547 - 53395499
Alignment:
| Q |
222 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaag |
270 |
Q |
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| T |
53395547 |
gattttccagttcctggaggaccataaagaagataacctcttttccaag |
53395499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 2860462 - 2860519
Alignment:
| Q |
49 |
tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga |
106 |
Q |
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| T |
2860462 |
tcttcctctgaccggtaagctcgagagaacaatcaatatcttcaataacgataactga |
2860519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 2865841 - 2865898
Alignment:
| Q |
49 |
tcttcctctgaccggtaagatcaagtgaacaatcgatatcttctataacaacaactga |
106 |
Q |
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| T |
2865841 |
tcttcctttgaccggtaagctcaagagaacaatcaatatcttcaataacgataactga |
2865898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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