View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_2D_low_61 (Length: 269)
Name: NF0342_2D_low_61
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_61 |
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| [»] scaffold0070 (1 HSPs) |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 24895401 - 24895153
Alignment:
| Q |
20 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24895401 |
agactttcatttaaattgttattgtcaaatctaacatccctcaagaaagtcatgttgttaggcggtggaattttacatgcatatgtgtaacttttacatc |
24895302 |
T |
|
| Q |
120 |
taagtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24895301 |
taagtatcaacgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
24895202 |
T |
|
| Q |
220 |
aaccaataattccattgaaaagttactataaaattctagtataatctag |
268 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24895201 |
aaccaataatttcattgaaaagttactataaaattctagtataatctag |
24895153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 25628409 - 25628657
Alignment:
| Q |
20 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
119 |
Q |
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|
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
25628409 |
agactttcatttaaattattatcgtcaaatctaacacccctcaagaaagtcatattgttaagcaatggagttttacatgcatatgtgtaacttttacatc |
25628508 |
T |
|
| Q |
120 |
taagtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
219 |
Q |
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|
||||||| | ||| |||||| || |||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
25628509 |
taagtattattgtactgtccagattaattattttagcgctgtttattttttataattaaaattttgattaggagatagagaccaatgtaaggtcattcag |
25628608 |
T |
|
| Q |
220 |
aaccaataattccattgaaaagttactataaaattctagtataatctag |
268 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
25628609 |
aaccaataatttcattgaaaagttattataaaattcatgtataatctag |
25628657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 25326256 - 25326362
Alignment:
| Q |
20 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
119 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
25326256 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtcgaattttacatgcatatgtgtaacttttaaatc |
25326355 |
T |
|
| Q |
120 |
taagtat |
126 |
Q |
| |
|
||||||| |
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|
| T |
25326356 |
taagtat |
25326362 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 25370348 - 25370431
Alignment:
| Q |
27 |
catttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
110 |
Q |
| |
|
|||||||||||||| || ||||| | || || |||| |||||||||||||||||| |||||||| || ||||| |||||||| |
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| T |
25370348 |
catttaaattgttaacgccaaatttgaccaccttcaaagaagtcatgttgttaagcgatggaatttcacctgcatgtgtgtaac |
25370431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 25395134 - 25395187
Alignment:
| Q |
57 |
ccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
110 |
Q |
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||||||| |||||||||||||||||| |||||||| || ||||| |||||||| |
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| T |
25395134 |
ccctcaaataagtcatgttgttaagcgatggaatttcacctgcatgtgtgtaac |
25395187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 25326366 - 25326406
Alignment:
| Q |
205 |
tgtaaggtcattgggaaccaataattccattgaaaagttac |
245 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||||||| |
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|
| T |
25326366 |
tgtaagttcattgagaaccaataatttcattgaaaagttac |
25326406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25806481 - 25806525
Alignment:
| Q |
66 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
110 |
Q |
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|||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
25806481 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25806525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25811511 - 25811555
Alignment:
| Q |
66 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
110 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| |||||||| |
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|
| T |
25811511 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25811555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25824205 - 25824249
Alignment:
| Q |
66 |
aagtcatgttgttaagcggtggaattttacatgcatatgtgtaac |
110 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| |||||||| |
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| T |
25824205 |
aagtcaggttgttaagcggtggaatttcacctgcatgtgtgtaac |
25824249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 31741 - 31493
Alignment:
| Q |
20 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
119 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31741 |
agactttcatttaaattgttatcgtcaaatctaacatccctaaaaaaagttatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
31642 |
T |
|
| Q |
120 |
taagtatcagcgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgtaaggtcattggg |
219 |
Q |
| |
|
||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |
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|
| T |
31641 |
taagtattattgtactgtccaagttaattattttggggctatttattttttataattaaaattttgattagaagatagagaccaatgtaaggtcattgag |
31542 |
T |
|
| Q |
220 |
aaccaataattccattgaaaagttactataaaattctagtataatctag |
268 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
31541 |
aaccaataatttcattgaaaagttattataaaattcaagtataatctag |
31493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 604 - 498
Alignment:
| Q |
20 |
agactttcatttaaattgttatcgtcaaatctaacatccctcaagaaagtcatgttgttaagcggtggaattttacatgcatatgtgtaacttttacatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
604 |
agactttcatttaaattgttatcgtcaaatctaacttccctcaagaaagtcatatcgttaagcggtggaatattacatgcatatgtgtaacttttacatc |
505 |
T |
|
| Q |
120 |
taagtat |
126 |
Q |
| |
|
||||||| |
|
|
| T |
504 |
taagtat |
498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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