View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_69 (Length: 252)
Name: NF0342_2D_low_69
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 14257803 - 14257669
Alignment:
| Q |
17 |
aaattcaaactcgagtaaagtctagccaatttgttataatgtcttctagaaactaaccaatatgttccccaccaaagtgagaagactaattactctatcg |
116 |
Q |
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| T |
14257803 |
aaattcaaactcgagtaaagtctagccaatttgttataatgtcttctagaaactaactaatatgttccccaccaaagtgagaagactaattactctatcg |
14257704 |
T |
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| Q |
117 |
aaaaatatagatagtactattgagtataaattcaa |
151 |
Q |
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| T |
14257703 |
aaaaatatagatagtactattgagtataaattcaa |
14257669 |
T |
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Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 14257145 - 14257050
Alignment:
| Q |
143 |
taaattcaataacatgctacttttgaaagtgctgtttacatgtggttgttatggccatggacaagtaattcttctcatctattcttttaaccactg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14257145 |
taaattcaataacatgctacttttgaaagtgctgtttacatgtggttgttatggccatggacaagtaattcttctcatctattcttttaaccactg |
14257050 |
T |
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