View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_75 (Length: 232)

Name: NF0342_2D_low_75
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_75
NF0342_2D_low_75
[»] chr3 (2 HSPs)
chr3 (34-215)||(4271694-4271875)
chr3 (42-214)||(42346596-42346771)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 4271694 - 4271875
Alignment:
Q  34 aagattgcgaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 133  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271694 aagattgcgaggaagatttgaagggtttcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 4271793  T
Q  134 gaataattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgat 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4271794 gaatgattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcgtgagcttgat 4271875  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 42346596 - 42346771
Alignment:
Q  42 gaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaagaataa-- 139  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||| ||||||      
T  42346596 gaggaagatttcaagggtttcacgaaaagtgaggttactgtgatagacacgagttgtccagtgtggaaagttgataagtttgtgttcagaaggaataatg 42346695  T
Q  140 -ttggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttga 214  Q
     ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  42346696 tttggaaaatcagagagaggaaacaaaagaacaagtttgtagcgaagaagaagagtaaatcgacccatgagcttga 42346771  T

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