View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_2D_low_78 (Length: 219)

Name: NF0342_2D_low_78
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_2D_low_78
NF0342_2D_low_78
[»] chr2 (1 HSPs)
chr2 (4-205)||(41380255-41380457)
[»] chr6 (3 HSPs)
chr6 (124-199)||(8043742-8043819)
chr6 (12-57)||(7969835-7969879)
chr6 (12-57)||(8033905-8033949)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 41380255 - 41380457
Alignment:
Q  4 atttttacactttctaagttttgtacttcattcaagcatctattatagatgctatacaaacaccaaccaaagtctcacc-aaaaaagcttcacttaaaac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  41380255 atttttacactttctaagttttgtacttcattcaagcatctattatagatgctatacaaacaccaaccaaagtctccccaaaaaaagcttcacttaaaac 41380354  T
Q  103 atttaagcaagnnnnnnnnnntcattgaatcttccacacac-aaaaatatcattgaatagaagcaatttccttcatttgttcttcaattgaaactcaatg 201  Q
    |||||||||||          |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  41380355 atttaagcaag-aaaaaaaaatcattgaatcttccacacacaaaaaatatcattgaatacaagcaatttccttcatttgttcttcaattgaaactcaatt 41380453  T
Q  202 atgt 205  Q
    ||||    
T  41380454 atgt 41380457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 8043819 - 8043742
Alignment:
Q  124 tcattgaatcttccacacacaaaaa-tatcattgaatagaagcaatttccttca-tttgttcttcaattgaaactcaa 199  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| | ||||||||||||    
T  8043819 tcattgaatcttccacacacaaaaaatatcattgaatagaaacaatttccttcattttgttctaccattgaaactcaa 8043742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 7969835 - 7969879
Alignment:
Q  12 actttctaagttttgtacttcattcaagcatctattatagatgcta 57  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||    
T  7969835 actttctaa-ttttgtacttcaatcaagcatctattatagatgcta 7969879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 8033949 - 8033905
Alignment:
Q  12 actttctaagttttgtacttcattcaagcatctattatagatgcta 57  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||    
T  8033949 actttctaa-ttttgtacttcaaccaagcatctattatagatgcta 8033905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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