View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_82 (Length: 218)
Name: NF0342_2D_low_82
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41380276 - 41380144
Alignment:
| Q |
1 |
aaaacttagaaagtgtaaaaatagatgagaaaattaaactacagatacattatatgagctaggttttgtaattttgttgaagatgttcatagaatgagac |
100 |
Q |
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| T |
41380276 |
aaaacttagaaagtgtaaaaatggatgagaaaattaaactacagatacattatatgagctaggttttgtaattttgttgaagatgtacatagaatgagac |
41380177 |
T |
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| Q |
101 |
catgacattataggtggtgaaatcattgaatct |
133 |
Q |
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| T |
41380176 |
catgacattataggtggtgaaatccttgtatct |
41380144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 41380372 - 41380457
Alignment:
| Q |
120 |
aaatcattgaatcttccacacacaaaa-atatcattgaatagaagcaatttccttcatttgttcttcaattgaaactcaatgatgt |
204 |
Q |
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| T |
41380372 |
aaatcattgaatcttccacacacaaaaaatatcattgaatacaagcaatttccttcatttgttcttcaattgaaactcaattatgt |
41380457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 7969812 - 7969713
Alignment:
| Q |
31 |
aaattaaactacagatacattatat----gagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacat--tataggtggtgaaatc |
124 |
Q |
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| T |
7969812 |
aaattaagctacagatacattatatatatgagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacattatataggtggtgaaatc |
7969713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 8033968 - 8034067
Alignment:
| Q |
31 |
aaattaaactacagatacattata----tgagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacat--tataggtggtgaaatc |
124 |
Q |
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| T |
8033968 |
aaattaagctacagatacattatatatatgagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacatcatataggtggtgaaatc |
8034067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 8043822 - 8043742
Alignment:
| Q |
120 |
aaatcattgaatcttccacacacaaaaa-tatcattgaatagaagcaatttccttca-tttgttcttcaattgaaactcaa |
198 |
Q |
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| T |
8043822 |
aaatcattgaatcttccacacacaaaaaatatcattgaatagaaacaatttccttcattttgttctaccattgaaactcaa |
8043742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 8043947 - 8043995
Alignment:
| Q |
30 |
aaaattaaactacagatacattatatgagctaggttttgtaattttgtt |
78 |
Q |
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| T |
8043947 |
aaaattaaactacagatacataatatgagttaggttttataattttgtt |
8043995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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