View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_84 (Length: 214)
Name: NF0342_2D_low_84
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 36427617 - 36427422
Alignment:
| Q |
1 |
gcaaagcatgtaagaatgctcaatcttctcgagtgttcggtatgcaatattcaattggttaggaacttaggtgttcattttacacaacatgtaacaatgt |
100 |
Q |
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| T |
36427617 |
gcaaagcatgtaagaatgctcaatcttctcgagtgttcggtatgcaatattcaattggttaggaacttaggtgttcattttacacaacatgtaacaatgt |
36427518 |
T |
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| Q |
101 |
ggacatacagctagatcaatttgctggattgctaggaggttagaaagaatgtatgaatatgttagcttgtgtgagatttgctagcttatgggtgat |
196 |
Q |
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| T |
36427517 |
ggacatacagctagatcaatttgctggattgctaggaggttagaaagaatgtaagaatatgttagcttgtgtgagatttgctagcttatgggtgat |
36427422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 36427718 - 36427601
Alignment:
| Q |
39 |
ggtatgcaatattcaattggttaggaacttaggtgttcattttacacaacatgtaacaatgtggacatacagctagatcaatttgctggattgctaggag |
138 |
Q |
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| T |
36427718 |
ggtatgcaatattcaatcagttaagaatttagccgttcattctaaacaacat--aacaatgtggacatacagcaagatcaatttgctggattgctaggag |
36427621 |
T |
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| Q |
139 |
gttagaaagaatgtatgaat |
158 |
Q |
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| T |
36427620 |
gttgcaaagcatgtaagaat |
36427601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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