View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_2D_low_9 (Length: 707)
Name: NF0342_2D_low_9
Description: NF0342_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_2D_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 310 - 687
Target Start/End: Complemental strand, 6720908 - 6720531
Alignment:
| Q |
310 |
ctaagagtttcatatacaattgttgcatggatggttatattactttgtttcatgaaaaacgtgcaggttcttaccaatggtattgaagtgaagctgcaga |
409 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6720908 |
ctaagagtttcacatacaattgttgcatggatggttatattactttgtttcatgaaaaatgtgcaggttcttaccaatggtattgaagtgaagctgcaga |
6720809 |
T |
|
| Q |
410 |
ggaatgctcttagtgtgattgaaccaccaaccggtctcgaggaagatgatgaccttgaatttgaaaataccatttggcatggatcagatatgggtgagtt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6720808 |
ggaatgctcttagtgtgattgaaccaccaaccggtctcgaggaagatgatgaccttgaatttgaaaataccatttggcatggatcagatatgggtgagtt |
6720709 |
T |
|
| Q |
510 |
tcaatttgggatgttgctgtgtaattgtatctcttccttttgattttcccgattgctgattttgtttgtgctatgtttgatttctcagcatcagatgaca |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6720708 |
tcaatttgggatgttgctgtgtaattgtatctcttccttttgatttccccgattgctgattttgtttgtgctatgtttgatttctcagcatcagatgaca |
6720609 |
T |
|
| Q |
610 |
cacaaaagtcctacagatcaaggcctagaatgcatagatcattaggatcatctcacaggagcatgagcagatccttct |
687 |
Q |
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| T |
6720608 |
cacaaaagtcctacagatcaaggcctagaatgcatagatcattaggatcatctcacaggagcatgagcagatccttct |
6720531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 6721202 - 6720994
Alignment:
| Q |
16 |
acatcatctttgcaactcaccttttggttttggtaatatttttgtttgttaaatgaggtatttattatgaacttgaatattgccaattttattcaatctt |
115 |
Q |
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| T |
6721202 |
acatgatctttgcaactcaccttttggttttggtaatatttttgtttgttaaatgaggtatttattatgaacttgaatattgccaattttattcaatctt |
6721103 |
T |
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| Q |
116 |
tcctattttaaagagtnnnnnnnntcattacttgatgannnnnnncaatatgttgatgttcaatctcagattgttgcttttagctacatgcatgctttga |
215 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6721102 |
tcctattttaaagagtaaaaaaaatcattacttgatgatttttttcaatatgttgatgttcaatctcagattgttgcttttagctacatgcatgctttga |
6721003 |
T |
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| Q |
216 |
ttgtaactc |
224 |
Q |
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||||||||| |
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| T |
6721002 |
ttgtaactc |
6720994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 371 - 473
Target Start/End: Complemental strand, 52219930 - 52219828
Alignment:
| Q |
371 |
tgcaggttcttaccaatggtattgaagtgaagctgcagaggaatgctcttagtgtgattgaaccaccaaccggtctcgaggaagatgatgaccttgaatt |
470 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| || || ||| |||||||||||||||||||| |
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| T |
52219930 |
tgcaggttcttactaatggaattgaagtgaagctgcaaaggaatgctcttagtgtgattgaagcacccactggcaacgaagaagatgatgaccttgaatt |
52219831 |
T |
|
| Q |
471 |
tga |
473 |
Q |
| |
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||| |
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| T |
52219830 |
tga |
52219828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 687
Target Start/End: Complemental strand, 52219327 - 52219216
Alignment:
| Q |
576 |
tgtgctatgtttgatttctcagcatcagatgacacacaaaagtcctacagatcaaggcctagaatgcatagatcattaggatcatctcacaggagcatga |
675 |
Q |
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|||| |||||||||||||||||||||||| || ||||| ||||| ||| ||| |||| ||||||||||||||||| ||||||| ||||| || ||||| |
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| T |
52219327 |
tgtgttatgtttgatttctcagcatcagacgatacacacaagtctcacaaatcgaggcacagaatgcatagatcattgggatcatgtcacaagaccatga |
52219228 |
T |
|
| Q |
676 |
gcagatccttct |
687 |
Q |
| |
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| || ||||||| |
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| T |
52219227 |
gtaggtccttct |
52219216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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