View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_high_13 (Length: 301)
Name: NF0342_high_13
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 98 - 293
Target Start/End: Complemental strand, 7995132 - 7994937
Alignment:
| Q |
98 |
cactgacaagcaacctgatgaaatcagaagttcttctcccacctctcgttctattgatgacataaaaagcaccaattcaaaggtataatcccttctcagt |
197 |
Q |
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| T |
7995132 |
cactgacaagcaacctgatgaaatcagaagttcttctcccacctctcgttctattgatgacataaaaagcaccaattcaaaggtataatcccttctcagt |
7995033 |
T |
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| Q |
198 |
aattggtgggtgtgcactgtgcaatcaggatacaagattcaannnnnnnnnnnnnngttcatttggaacgttgaatttatgacactaatgaagtat |
293 |
Q |
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| T |
7995032 |
aattggtgggtgtgcactgtgcaatcaagatacaagattcaatttttattttttttgttcatttggaacgttgaatttatgacactaatgaagtat |
7994937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 23776787 - 23776727
Alignment:
| Q |
28 |
cttttcttgtttttctcctgatgatgatggatgatttaagccaacaacgtaatcacaggttctg |
91 |
Q |
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| T |
23776787 |
cttttcttgtttttctcctgatgatg---gattatttaagccaacaacgtaatcacagggtctg |
23776727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 32298332 - 32298364
Alignment:
| Q |
52 |
tgatggatgatttaagccaacaacgtaatcaca |
84 |
Q |
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| T |
32298332 |
tgatggatgatttaagccaacaacgtaatcaca |
32298364 |
T |
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