View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_high_15 (Length: 251)
Name: NF0342_high_15
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_high_15 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 43435632 - 43435402
Alignment:
| Q |
20 |
gacatcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaaga |
119 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
43435632 |
gacagcatcctccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctcctcaata |
43435533 |
T |
|
| Q |
120 |
atactccaaaactcctcaattgactccatccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaaccc |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43435532 |
atactccaaaactcctcaattgattccatccttggaagaactctagcaactgcattataagtcactgtattctgttgataaccagattgcttcccaaccc |
43435433 |
T |
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| Q |
220 |
aatgaaaacacttatatgcctttaagggact |
250 |
Q |
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|||||||| ||||||| |||||||||||||| |
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| T |
43435432 |
aatgaaaaaacttataagcctttaagggact |
43435402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 43443826 - 43443596
Alignment:
| Q |
20 |
gacatcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaaga |
119 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
43443826 |
gacagcatcctccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctcctcaata |
43443727 |
T |
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| Q |
120 |
atactccaaaactcctcaattgactccatccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaaccc |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43443726 |
atactccaaaactcctcaattgattccatccttggaagaactctagcaactgcattataagtcactgtattctgttgataaccagattgcttcccaaccc |
43443627 |
T |
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| Q |
220 |
aatgaaaacacttatatgcctttaagggact |
250 |
Q |
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|||||||| ||||||| |||||||||||||| |
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| T |
43443626 |
aatgaaaaaacttataagcctttaagggact |
43443596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 43427120 - 43426897
Alignment:
| Q |
27 |
tcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactcc |
126 |
Q |
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|||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43427120 |
tcctccatcatcctattatttagaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactcc |
43427021 |
T |
|
| Q |
127 |
aaaactcctcaattgactccatccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaa |
226 |
Q |
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|||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
43427020 |
aaaacttctcaattgactccattctaggaagaactctagcaactgcattataagtcactgtattctgtagataaccagattgctttccaacccaatgaaa |
43426921 |
T |
|
| Q |
227 |
acacttatatgcctttaagggact |
250 |
Q |
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| ||||||| |||||||| ||||| |
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| T |
43426920 |
aaacttataagcctttaaaggact |
43426897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 43422544 - 43422342
Alignment:
| Q |
25 |
catcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatact |
124 |
Q |
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|||||| |||||||| ||||||| || |||| | | |||||| || |||||||||| |||||||||| | ||||||||||||||| |||||||||| |
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| T |
43422544 |
catccttcatcatctgattctttacaaactgcattgttatcttcatataagtatcaatctccaattcataattcacactcttcatctccgcaagaatact |
43422445 |
T |
|
| Q |
125 |
ccaaaactcctcaattgactccatccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatga |
224 |
Q |
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|||||||||||||||||| |||||||| | ||||||| ||||||||||||| |||||||| | ||| ||||||||||||| ||||||||||||||||| | |
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| T |
43422444 |
ccaaaactcctcaattgaatccatcctagcaagaactctagcaactgcattgtaagtcacagcattatgttgataaccagattgcttcccaacccaataa |
43422345 |
T |
|
| Q |
225 |
aaa |
227 |
Q |
| |
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||| |
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| T |
43422344 |
aaa |
43422342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 40186180 - 40186396
Alignment:
| Q |
30 |
tccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaa |
129 |
Q |
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||||||||| |||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40186180 |
tccatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgaccgacactcttcatctcctc---gatactccaaa |
40186276 |
T |
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| Q |
130 |
actcctcaattgactccatccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaaca |
229 |
Q |
| |
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||||||||||||| |||||| | | ||||||| | ||||| ||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||| | |
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| T |
40186277 |
actcctcaattgagtccatcttagcaagaactcttgcaacataattgtaagtcacggtattatgttgataaccagattgcttcccaacccaatgaaaaaa |
40186376 |
T |
|
| Q |
230 |
cttatatgcctttaagggac |
249 |
Q |
| |
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||| || |||||||| |||| |
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| T |
40186377 |
cttgtaagcctttaaaggac |
40186396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 21095 - 20882
Alignment:
| Q |
20 |
gacatcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaaga |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
21095 |
gacaacatcctccatcatcttattcttttgaagctgcctcgatatc-----------------ctccaattcatgacagacactcttcgtctcctcaaga |
21013 |
T |
|
| Q |
120 |
atactccaaaactcctcaattgactccatccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaaccc |
219 |
Q |
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|||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||| ||||||||| || || ||| ||||||| |
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| T |
21012 |
atactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgtattccgttgataactagatttctttccaaccc |
20913 |
T |
|
| Q |
220 |
aatgaaaacacttatatgcctttaagggact |
250 |
Q |
| |
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|||||||| ||||||| |||||||| ||||| |
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| T |
20912 |
aatgaaaaaacttataagcctttaaaggact |
20882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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