View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_high_16 (Length: 250)

Name: NF0342_high_16
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_high_16
NF0342_high_16
[»] chr2 (24 HSPs)
chr2 (1-240)||(32127144-32127383)
chr2 (56-240)||(42439966-42440150)
chr2 (56-240)||(35962695-35962879)
chr2 (56-243)||(41251634-41251821)
chr2 (55-240)||(16405579-16405764)
chr2 (51-243)||(6403804-6403996)
chr2 (60-243)||(31581622-31581805)
chr2 (56-243)||(17445041-17445226)
chr2 (56-240)||(18981597-18981780)
chr2 (76-243)||(44084603-44084770)
chr2 (56-213)||(2958131-2958287)
chr2 (76-243)||(45418583-45418750)
chr2 (82-242)||(771005-771165)
chr2 (76-242)||(8147351-8147518)
chr2 (173-243)||(12756837-12756907)
chr2 (173-240)||(2285959-2286026)
chr2 (85-151)||(7072644-7072710)
chr2 (78-240)||(8059336-8059498)
chr2 (100-151)||(34905973-34906024)
chr2 (213-243)||(26238080-26238110)
chr2 (100-156)||(4555298-4555354)
chr2 (169-243)||(26162702-26162773)
chr2 (76-124)||(26237957-26238004)
chr2 (50-106)||(34523214-34523270)
[»] chr4 (37 HSPs)
chr4 (56-243)||(25930688-25930875)
chr4 (60-243)||(36382346-36382528)
chr4 (56-240)||(29319708-29319892)
chr4 (56-243)||(20129290-20129477)
chr4 (76-243)||(30216742-30216909)
chr4 (59-240)||(40528996-40529179)
chr4 (56-243)||(47500753-47500940)
chr4 (53-243)||(13012165-13012355)
chr4 (53-243)||(43143584-43143774)
chr4 (56-243)||(26439279-26439466)
chr4 (56-243)||(34407284-34407471)
chr4 (59-243)||(17511233-17511417)
chr4 (79-243)||(3292896-3293060)
chr4 (76-241)||(50205079-50205244)
chr4 (76-243)||(6690235-6690402)
chr4 (56-243)||(43355884-43356071)
chr4 (169-243)||(6235613-6235687)
chr4 (78-243)||(48989330-48989495)
chr4 (77-231)||(42333788-42333942)
chr4 (76-243)||(10352884-10353051)
chr4 (169-243)||(44156744-44156818)
chr4 (82-243)||(29995983-29996144)
chr4 (169-243)||(28877250-28877324)
chr4 (169-243)||(35546046-35546120)
chr4 (77-243)||(30077631-30077797)
chr4 (78-156)||(45194178-45194256)
chr4 (169-243)||(1817810-1817884)
chr4 (169-231)||(13392893-13392955)
chr4 (169-231)||(13396032-13396094)
chr4 (76-243)||(26448053-26448219)
chr4 (51-156)||(27363336-27363441)
chr4 (78-124)||(30109958-30110004)
chr4 (209-243)||(30110108-30110142)
chr4 (209-243)||(48130111-48130145)
chr4 (88-156)||(48129978-48130046)
chr4 (54-117)||(7769306-7769369)
chr4 (76-113)||(49908782-49908819)
[»] chr7 (18 HSPs)
chr7 (56-240)||(5555467-5555651)
chr7 (55-240)||(3114099-3114284)
chr7 (60-243)||(8394109-8394292)
chr7 (60-243)||(36630800-36630983)
chr7 (56-241)||(14777109-14777294)
chr7 (76-243)||(34389056-34389223)
chr7 (76-243)||(37002144-37002311)
chr7 (85-243)||(35090177-35090335)
chr7 (76-243)||(33685564-33685731)
chr7 (76-241)||(8867733-8867898)
chr7 (95-243)||(40920003-40920151)
chr7 (169-243)||(26624839-26624913)
chr7 (169-243)||(36658274-36658348)
chr7 (169-242)||(38638237-38638310)
chr7 (83-243)||(43184468-43184628)
chr7 (169-243)||(7002818-7002892)
chr7 (169-243)||(7048689-7048763)
chr7 (209-243)||(10868456-10868490)
[»] chr5 (20 HSPs)
chr5 (59-240)||(10033910-10034091)
chr5 (59-243)||(13817960-13818144)
chr5 (55-240)||(39657509-39657694)
chr5 (55-243)||(36293621-36293809)
chr5 (56-243)||(39434676-39434863)
chr5 (60-242)||(1776377-1776559)
chr5 (56-227)||(3155647-3155818)
chr5 (56-243)||(26283318-26283505)
chr5 (76-243)||(12278860-12279027)
chr5 (76-243)||(17332551-17332718)
chr5 (76-243)||(31680367-31680534)
chr5 (94-243)||(16155015-16155164)
chr5 (108-240)||(16333879-16334011)
chr5 (76-243)||(37254641-37254808)
chr5 (90-243)||(33430335-33430488)
chr5 (76-243)||(31501716-31501883)
chr5 (78-243)||(36291373-36291538)
chr5 (71-243)||(19985934-19986106)
chr5 (95-243)||(43068896-43069044)
chr5 (59-112)||(14316641-14316694)
[»] chr6 (9 HSPs)
chr6 (56-240)||(34948761-34948945)
chr6 (56-240)||(13837801-13837985)
chr6 (56-243)||(398597-398784)
chr6 (76-243)||(18339106-18339273)
chr6 (76-243)||(28996730-28996897)
chr6 (82-243)||(29743289-29743450)
chr6 (76-156)||(31028451-31028531)
chr6 (169-243)||(33229336-33229410)
chr6 (76-112)||(13647017-13647053)
[»] chr8 (13 HSPs)
chr8 (59-243)||(29728386-29728570)
chr8 (60-240)||(15838270-15838449)
chr8 (53-243)||(3648794-3648984)
chr8 (80-243)||(16788025-16788188)
chr8 (56-243)||(39914495-39914681)
chr8 (75-243)||(34136825-34136993)
chr8 (76-243)||(4404008-4404175)
chr8 (76-243)||(23402108-23402275)
chr8 (76-243)||(36408551-36408718)
chr8 (169-243)||(42231030-42231104)
chr8 (169-230)||(9877313-9877374)
chr8 (76-151)||(2729288-2729363)
chr8 (209-243)||(40470475-40470509)
[»] chr1 (12 HSPs)
chr1 (56-240)||(7433425-7433609)
chr1 (59-243)||(42310941-42311125)
chr1 (56-243)||(26144235-26144422)
chr1 (63-243)||(32982056-32982236)
chr1 (80-243)||(3828988-3829150)
chr1 (76-242)||(17445313-17445479)
chr1 (76-243)||(35907552-35907719)
chr1 (169-243)||(321377-321451)
chr1 (56-156)||(23313218-23313319)
chr1 (209-243)||(33489839-33489873)
chr1 (209-243)||(41972256-41972290)
chr1 (77-124)||(41972394-41972440)
[»] chr3 (19 HSPs)
chr3 (60-243)||(34084122-34084305)
chr3 (56-243)||(22968444-22968631)
chr3 (56-242)||(6269427-6269613)
chr3 (56-243)||(19390126-19390313)
chr3 (59-243)||(40081741-40081922)
chr3 (56-243)||(39771770-39771957)
chr3 (76-243)||(45182981-45183148)
chr3 (54-243)||(11018212-11018401)
chr3 (75-243)||(27935177-27935345)
chr3 (76-243)||(6930894-6931061)
chr3 (76-243)||(33040953-33041120)
chr3 (76-243)||(45335875-45336041)
chr3 (56-243)||(6503569-6503756)
chr3 (169-243)||(35514355-35514429)
chr3 (60-128)||(22922141-22922209)
chr3 (195-243)||(22922214-22922262)
chr3 (76-227)||(19565517-19565668)
chr3 (209-243)||(5135421-5135455)
chr3 (76-124)||(5354709-5354757)
[»] scaffold0069 (1 HSPs)
scaffold0069 (54-243)||(17820-18009)
[»] scaffold0002 (1 HSPs)
scaffold0002 (56-243)||(480457-480644)
[»] scaffold2142 (1 HSPs)
scaffold2142 (53-243)||(499-689)
[»] scaffold0502 (1 HSPs)
scaffold0502 (76-243)||(5230-5397)
[»] scaffold0041 (1 HSPs)
scaffold0041 (95-243)||(52944-53092)
[»] scaffold0154 (1 HSPs)
scaffold0154 (76-243)||(31480-31647)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32127383 - 32127144
Alignment:
1 aaggcatgcatgcataaaagttacattgaaatggttataaatattagcacataaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
32127383 aaggcatgcatgcataaaagttacattgaaatggttataaatatttgcacataaccatgggcggttctagcgtatggcgaccccgggcggtcgcccgggc 32127284  T
101 tcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaata 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||            || |||||||||||||||||||||||||||||    
32127283 tcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggcaatctgaaaattgtcacacgcaaata 32127184  T
201 tatcttggaattttatttagcacactattgacgggttcat 240  Q
     |||||||||||||||||||||||||||||||||||||||    
32127183 gatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 42439966 - 42440150
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||    
42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacattta 42440065  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||    
42440066 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcat 42440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 35962695 - 35962879
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| |||||||||||||| |||||||| |||| ||||||| ||||||||||||||||| |||  ||||||||||| |||||||||||||    
35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacattta 35962794  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
35962795 caaaaagaaaattttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 41251821 - 41251634
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||| | | |||||||||||||||||||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||    
41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 41251722  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| | ||||||||    
41251721 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 41251634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 16405579 - 16405764
Alignment:
55 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattt 154  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||| ||| ||| ||||||||||||| ||| |||  ||||||||||||||||||||||||    
16405579 ccatgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattt 16405678  T
155 acnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |             |||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
16405679 ataaaaagaaaaatttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 243
Target Start/End: Complemental strand, 6403996 - 6403804
Alignment:
51 ataaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacac 150  Q
    ||||||||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| ||||| ||||||||||    
6403996 ataaccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacac 6403897  T
151 atttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||             |||||||||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
6403896 atttataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 6403804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 31581805 - 31581622
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    ||||||||||  ||||||||||| ||||||||||||| | ||||| | ||| |||||||| |||| |||   ||||||||| |||||||||||||||       
31581805 ggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaa 31581706  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
             ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
31581705 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 17445226 - 17445041
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||| |||||||| ||||||||||||||  ||||||| |||||||||||||  || |||  |||||||||| ||||||||||||||    
17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacattta 17445129  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| | ||||||||    
17445128 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 17445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 18981597 - 18981780
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||||||||||||| ||||||||| |||| ||||||  ||||||||||||||||| |||  |||||||||  |||||| |||||||    
18981597 catgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacattta 18981695  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||| | ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||    
18981696 caaaaagaaaaatttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcat 18981780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 44084770 - 44084603
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||   | ||||||| ||||||||||| ||||            |||||||    
44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggca 44084671  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||| |||||||||  |||  ||||||||||||||||||||||||||||||||||||    
44084670 atctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 2958287 - 2958131
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| |||||||||||| |||  |||||||||| ||||||||||||||    
2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataa-ttttgcacattagactcaacccaaaagcccattaacacattta 2958189  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattt 213  Q
    |            ||||| ||||||||||||||||||||||||||  |||||||||||    
2958188 caaagagaaaaatttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 45418583 - 45418750
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||| |    ||||||||||  ||||||||| ||||            |||||||    
45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45418682  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||    
45418683 atctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

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Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 771005 - 771165
Alignment:
82 cccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctga 181  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| ||   ||| |||||| |||||||||| ||||            |||||||||||||    
771005 cccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctga 771104  T
182 aaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatct 242  Q
    ||||| |||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||    
771105 aaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

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Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 8147351 - 8147518
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||   || ||||||   ||||||||| ||||            |||||||    
8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggca 8147450  T
176 atctgaaaa-ttgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatct 242  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
8147451 atctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

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Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 12756907 - 12756837
Alignment:
173 gcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
12756907 gcaatctgaaaattctcacacgcaaataagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 2285959 - 2286026
Alignment:
173 gcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||||    
2285959 gcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgacgtgttcat 2286026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 7072710 - 7072644
Alignment:
85 gggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacaca 151  Q
    |||||||||||||| ||||||| |||||||||  ||||||||||  |||||||||| ||||||||||    
7072710 gggcggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacaca 7072644  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 8059498 - 8059336
Alignment:
78 cgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaat 177  Q
    ||||||||| || |||||| | ||| ||| ||||||||||||||||| | |  ||||||||||  ||||||||| ||||            |||| ||||    
8059498 cgaccccggccgatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaat 8059399  T
178 ctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
     |||||||| |||||| |||||   ||| ||||||||||||||||||| ||||||||||||||    
8059398 ttgaaaattctcacacacaaatcggtctcggaattttatttagcacacaattgacgggttcat 8059336  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 34905973 - 34906024
Alignment:
100 ctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacaca 151  Q
    ||||||| |||||||||||||||||| | | |||||||||| ||||||||||    
34905973 ctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacaca 34906024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 26238080 - 26238110
Alignment:
213 ttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||    
26238080 ttatttagcacactattgacgggttcatctc 26238110  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 4555354 - 4555298
Alignment:
100 ctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttac 156  Q
    ||||||| ||||||||||||||| ||||   |||||||||||| |||||||| ||||    
4555354 ctcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttac 4555298  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 26162773 - 26162702
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||| ||| || ||||||  ||| |||   |||||||||||| ||||||||||||||||||    
26162773 ttgggcaatctaaaaattctcaaacacaaataggtctcgga---ttatttagcacattattgacgggttcatctc 26162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 26237957 - 26238004
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacatta 124  Q
    ||||||||||||||||||||||| ||||||| || ||||||||| ||||    
26237957 ggcgaccccgggcggtcgcccgggctcgatcgat-atttttgcaaatta 26238004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 34523214 - 34523270
Alignment:
50 cataaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatc 106  Q
    |||||||| |||||||| || ||   ||||||||||||||||||||||| |||||||    
34523214 cataaccaggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 34523270  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 25930688 - 25930875
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||    
25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacattta 25930787  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
25930788 caaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 36382528 - 36382346
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  ||| |||||  |||||||||||||||       
36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttac-aa 36382430  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
             |||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
36382429 aagaaaaatttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 29319892 - 29319708
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||||||| |||||| |||||||| || | ||||||| ||||||||||||||||| |||  |||||||| | ||||||||||||||    
29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacattta 29319793  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||| ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
29319792 caaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 20129290 - 20129477
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||    
20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 20129389  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            |||||||||||||||||||||||||| |||||  |||| ||||||||||| ||||||||||||| | ||||||||    
20129390 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctc 20129477  T

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Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 30216909 - 30216742
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||   ||||||||||| ||||||||| ||||            |||||||    
30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 30216810  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||    
30216809 atctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

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Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 40528996 - 40529179
Alignment:
59 gggcggttctagcgtatggcgaccccgggcg--gtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttac 156  Q
    ||||||||||| ||||||||||||| |||||  |||| |||| ||||||| |||||||||||||||||||||  ||| |||| |||||||||||||||||    
40528996 gggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttac 40529095  T
157 nnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
                |||| |||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
40529096 aaaaagaaaaatttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 47500753 - 47500940
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| |||||||||||||||||||||    
47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 47500852  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 ||||||||| |||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
47500853 tgaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 47500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 243
Target Start/End: Original strand, 13012165 - 13012355
Alignment:
53 aaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacat 152  Q
    ||||||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| | |  ||| ||||||||||||||||||    
13012165 aaccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacat 13012264  T
153 ttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||             ||||||||| |||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
13012265 ttataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 13012355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 43143774 - 43143584
Alignment:
53 aaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacat 152  Q
    ||||||||||||||  | |||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||||||||||  |||||||||     
43143774 aaccatgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacac 43143675  T
153 ttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||            |||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||| ||||| |||||||||||    
43143674 ttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 43143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 26439466 - 26439279
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| |||| || ||||||||||||||||| |||  |||||||||| ||||||||||||||    
26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 26439367  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 |||||||||||||||||||||||||| |||||  ||||| ||||||||||  |||||||||||| | ||||||||    
26439366 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 26439279  T

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Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 34407471 - 34407284
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| |||| || ||||||||||||||||| |||  |||||||||| ||||||||||||||    
34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 34407372  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 |||||||||||||||||||||||||| |||||  ||||| ||||||||||  |||||||||||| | ||||||||    
34407371 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 34407284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 17511417 - 17511233
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnn 158  Q
    ||||||||||| ||||||||||||| || ||||||||| | ||||||| ||||||||||||||||| |||  |||||||||| |||||||||||||||      
17511417 gggcggttctaccgtatggcgaccctgg-cggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 17511319  T
159 nnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttgg-aattttatttagcacactattgacgggttcatctc 243  Q
              ||||||||| |||||||||| |||||||||||  |||||| |||||||||||||||| ||||||  ||||||||||    
17511318 aaagaaaaatttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattgatcggttcatctc 17511233  T

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Target: chr4; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 3293060 - 3292896
Alignment:
79 gaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatc 178  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||| ||   ||||||||||  ||||||||| ||||            ||||||||||    
3293060 gaccccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatc 3292961  T
179 tgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||| |||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||    
3292960 tgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 50205244 - 50205079
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||| ||||||||||||||||  ||||||| ||||||||||||||||| |    ||||||||||  ||||||||| ||||            |||| ||    
50205244 ggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggaca 50205145  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatc 241  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
50205144 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

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Target: chr4; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 6690402 - 6690235
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||   ||||||||||  ||||||||| ||||            |||||||    
6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 6690303  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    | ||||||||| |||||||||||||  ||| | |||||||||||||||||||||||||||||| ||||    
6690302 aactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctc 6690235  T

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Target: chr4; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 43355884 - 43356071
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||| ||| ||||||||| |||| || ||||||||||||||||| |||  |||||||||| ||||||||||||||    
43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 43355983  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 |||||||||||||||||||||||||| |||||  ||||| ||||||||||  |||||||||||| | ||||||||    
43355984 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 43356071  T

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Target: chr4; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 6235613 - 6235687
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
6235613 ttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 6235687  T

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Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 48989330 - 48989495
Alignment:
78 cgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaat 177  Q
    |||| ||||||||||  ||||  |||||| ||||||||||||||||||||   || ||||||  |||||||||| ||||            |||||||||    
48989330 cgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaat 48989429  T
178 ctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||| ||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||    
48989430 ctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

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Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 42333942 - 42333788
Alignment:
77 gcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaa 176  Q
    |||| |||||||||||| |||| ||| ||| ||||||||||||||||| |||  ||||||||||  ||||||||| ||||            ||||||||    
42333942 gcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaa 42333843  T
177 tctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattga 231  Q
    |||||||||| |||||||||||||  ||| ||||||||||||||||||| |||||    
42333842 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

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Target: chr4; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 10353051 - 10352884
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||||| ||   ||| |||||  |||||||||||||||            |||||||    
10353051 ggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggca 10352952  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| | |||||||||||  ||| ||||||||||||||||||| | || ||| ||||||||    
10352951 atctgaaaattcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctc 10352884  T

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Target: chr4; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 44156744 - 44156818
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||| ||||||||||||| || ||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
44156744 ttggacaatctgaaaattctctcacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

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Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 243
Target Start/End: Complemental strand, 29996144 - 29995983
Alignment:
82 cccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctga 181  Q
    ||||| |||||| |||| ||||||| |||||||||| |||||| |||  ||| |||||  |||||||||||||||            |||||||||||||    
29996144 cccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctga 29996045  T
182 aaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||| |  ||||||||||  ||| ||||||||||| |||||||||||||||| ||||||||    
29996044 aaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

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Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 28877324 - 28877250
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||| ||||| |||||| |||||||||||||  ||| ||||||||||||||||||||||||| |||||||||||    
28877324 ttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacactattgatgggttcatctc 28877250  T

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Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 35546046 - 35546120
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||| ||||||||||||   |||  |||||||||||||||||||||||| |||||||||||    
35546046 ttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacactattgatgggttcatctc 35546120  T

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Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 30077797 - 30077631
Alignment:
77 gcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaa 176  Q
    |||||| ||||||||||||| | ||| ||| |||| |||||||||||| ||   ||| ||||| ||||||||||||||||            |||| |||    
30077797 gcgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaa 30077698  T
177 tctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||| | |||| ||||||  ||||| ||||||||||||||||||| || ||| ||||||||    
30077697 tctgaaaatttttacacacaaataggtcttgaaattttatttagcacactagtgccggattcatctc 30077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 45194178 - 45194256
Alignment:
78 cgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttac 156  Q
    ||||||| |||| | |||||| |||||||||||||||||||||||||||||  |||||||||  |||||||||| ||||    
45194178 cgaccccaggcgattgcccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttac 45194256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 1817810 - 1817884
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||| | |||||||||||  ||| ||||||||||||| |||||||||| ||| ||||||||    
1817810 ttgggcaatctaaaaattcttacacgcaaataggtctcggaattttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 13392955 - 13392893
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattga 231  Q
    ||||||||||| |||||| |||||||||||||  ||| | |||||||||||||||||||||||    
13392955 ttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 13396094 - 13396032
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattga 231  Q
    ||||||||||| |||||| |||||||||||||  ||| | |||||||||||||||||||||||    
13396094 ttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 26448053 - 26448219
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    |||||| ||| ||| ||| |||| ||||||| |||||||||||||||||||  | |||||||||  |||||||||| ||||            |||||||    
26448053 ggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaaaaaaat-ttgggca 26448151  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||| || ||||||  | | |||||||||||||||||||||||| ||| || |||||    
26448152 atctgaaaattctcatacacaaataggtttcggaattttatttagcacactattggcggatttatctc 26448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 27363336 - 27363441
Alignment:
51 ataaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacac 150  Q
    ||||||| |||||||| || |||||||||||| ||||||||||||||| ||||||| |   |||||||| ||||  |   |||||||||| |||||||||    
27363336 ataaccaggggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacac 27363435  T
151 atttac 156  Q
    | ||||    
27363436 acttac 27363441  T

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Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 30109958 - 30110004
Alignment:
78 cgaccccgggcggtcgcccggtctcgatcaataatttttgcacatta 124  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||    
30109958 cgaccccggacggtcgcccggactcgatcgataatttttgcacatta 30110004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 30110108 - 30110142
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||    
30110108 aattttatttagcacactattgacgggttcatctc 30110142  T

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Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 48130111 - 48130145
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||    
48130111 aattttatttagcacactattgacgggttcatctc 48130145  T

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Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 48129978 - 48130046
Alignment:
88 cggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttac 156  Q
    |||||| |||| ||||||| |||||||||||| |||| ||   ||||||||||||||||||||| ||||    
48129978 cggtcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttac 48130046  T

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Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 7769306 - 7769369
Alignment:
54 accatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttg 117  Q
    |||||||||||||  | |||  ||||||||| ||||||||||||| ||||||| ||||||||||    
7769306 accatgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 49908819 - 49908782
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatt 113  Q
    ||||||||||||||||||||||| ||||||| ||||||    
49908819 ggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 5555467 - 5555651
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||| ||||||    
5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcattta 5555566  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
5555567 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 3114284 - 3114099
Alignment:
55 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattt 154  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||| |||  |||||||||| |||||||||||||    
3114284 ccatgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 3114185  T
155 acnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    ||            ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
3114184 acaaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 8394109 - 8394292
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  ||| |||||  |||||||||||||||       
8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 8394208  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
             |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||| |||||    
8394209 aggaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctc 8394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 36630800 - 36630983
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||  ||| |||||  |||||||||||||||       
36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 36630899  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
             ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
36630900 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 14777294 - 14777109
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||| | |||| ||||||||||||||||| ||||||| ||||||||||||||||| |||  |||||||||||||||||||||||||    
14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacattta 14777195  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatc 241  Q
    |            |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| | ||||||    
14777194 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatc 14777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 34389223 - 34389056
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||   ||||||||||| ||||||||| ||||            |||||||    
34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 34389124  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||| ||| ||||||||||||||    
34389123 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 37002311 - 37002144
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||| ||   | |||||||   ||||||||| ||||            |||||||    
37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 37002212  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
37002211 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 35090177 - 35090335
Alignment:
85 gggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaa 184  Q
    |||||||||||||| ||||||||||||||||||||||||| ||   ||||||||||  ||||||||| ||||            ||||| ||||||||||    
35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
185 ttgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    || |||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||    
35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 33685564 - 33685731
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||| ||| ||||| ||| ||||||| ||||||||||||||||||||   |||||||||| |||||||||| ||||            |||||||    
33685564 ggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggca 33685663  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||| |||||||||| |||   ||||||||||||||||||||||||||||| |||||    
33685664 atctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacgggtttatctc 33685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 8867898 - 8867733
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||| ||   | ||||||||  ||||| ||||||||            |||||||    
8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggca 8867799  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatc 241  Q
    ||| ||||||| |||||||||||||  ||| |||||||||||||||||||||||||||| ||||||    
8867798 atcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 40920151 - 40920003
Alignment:
95 ccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacg 194  Q
    |||| ||||||| ||||||||||||||||| | || ||||||||||  ||||||||||||||            |||| ||||||||||||| ||||| |    
40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 40920052  T
195 caaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||  ||| |||||||||||||||||||||||||||||||||||||    
40920051 caaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

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Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 26624839 - 26624913
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
26624839 ttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

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Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 36658274 - 36658348
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
36658274 ttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

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Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 38638310 - 38638237
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatct 242  Q
    |||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
38638310 ttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

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Target: chr7; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 43184628 - 43184468
Alignment:
83 ccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaa 182  Q
    |||||||||||| ||| ||||||| ||||||||| | ||| | |||| ||||||||||  ||||||| | ||||            ||||||||||||||    
43184628 ccgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaa 43184529  T
183 aattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||| |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||    
43184528 aattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 7002818 - 7002892
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||| |||||| |||||| |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||    
7002818 ttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

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Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 7048689 - 7048763
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||| |||||| |||||| |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||    
7048689 ttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 10868490 - 10868456
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||| ||||||||||||||||    
10868490 aattttatttagcacacttttgacgggttcatctc 10868456  T

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Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 10033910 - 10034091
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnn 158  Q
    ||||||||||| |||||||||||||||| || |||||||| ||||||| ||||||||||||||||| |||  |||||||||| |||||||||||||||      
10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 10034009  T
159 nnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
              ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
10034010 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 13817960 - 13818144
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnn 158  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||  |||||||||| |||||||||||||||      
13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 13818059  T
159 nnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
              ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||    
13818060 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctc 13818144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 39657694 - 39657509
Alignment:
55 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattt 154  Q
    |||||||||||||||   |||||||||||| | ||||||  ||| ||||||  ||||||||||||||||| |||  ||||||||||||||||||||||||    
39657694 ccatgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacattt 39657595  T
155 acnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    ||            ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
39657594 acaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 36293809 - 36293621
Alignment:
55 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattt 154  Q
    ||||||||||||||| ||| ||||||||||| ||||||| |||| ||||||| |||||||||| |||||| |||  |||||||||| |||||||||||||    
36293809 ccatgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacattt 36293710  T
155 acnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||            |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| || | ||||||||    
36293709 acaaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctc 36293621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 39434676 - 39434863
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||| |||  |||||||||| ||||||||||||||    
39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacattta 39434775  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            |||||||||||||||||||||||| | |||||  |||| ||||||||||||||||||||||||| | ||||||||    
39434776 caaaatgaaaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctc 39434863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 242
Target Start/End: Complemental strand, 1776559 - 1776377
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||| |  ||| |||||  |||||||||||||||       
1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaa 1776460  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatct 242  Q
             ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||||    
1776459 aagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 3155818 - 3155647
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||  |||  ||| |||||  ||||||||||||||    
3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta 3155719  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacacta 227  Q
                 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
3155718 taaaaagaaaaatttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 26283505 - 26283318
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||| ||||||||||||||| ||||||| ||||||||||||||||| |||  ||| ||||| |||||||||||||||    
26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta 26283406  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 |||||||||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
26283405 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26283318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 12279027 - 12278860
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||   ||||||| ||  ||||||||| ||||            |||||||    
12279027 ggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggca 12278928  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||    
12278927 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 17332718 - 17332551
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||| ||   ||||||||||  ||||||||| ||||            |||||||    
17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 17332619  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||    
17332618 atctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 31680367 - 31680534
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||   ||||||||||  ||||||||| ||||            |||||||    
31680367 ggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31680466  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||    
31680467 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 16155015 - 16155164
Alignment:
94 cccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacac 193  Q
    ||||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||             || ||||||||||||||||||||||    
16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
194 gcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||||||    
16155115 gcaaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 16334011 - 16333879
Alignment:
108 ataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttg 207  Q
    ||||||||||||||||| | |  |||||||||| |||||||||||||||            ||||||||||||||||||||||||||||||||  |||||    
16334011 ataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttg 16333912  T
208 gaattttatttagcacactattgacgggttcat 240  Q
    ||||||||||||||||||||||||||| |||||    
16333911 gaattttatttagcacactattgacggattcat 16333879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 37254641 - 37254808
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||| ||||||||||| | ||||||| ||||||||||||||||| ||   |||||||||   ||||||||| ||||            |||||||    
37254641 ggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 37254740  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||    
37254741 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
90 gtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtc 189  Q
    ||||||||| ||||||| ||||||||||| ||||| ||   ||||||||||  ||||||||| ||||            |||||||||||||||||| ||    
33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctc 33430434  T
190 acacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
33430435 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 31501883 - 31501716
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    |||||||||||||| | |||||| ||||||| ||||||||||||||||| ||   ||||||||||  ||||||||| ||||            |||||||    
31501883 ggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31501784  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| || ||||||||||  ||| | ||||||||||||||||||||||| | |||||||||    
31501783 atctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattgatgagttcatctc 31501716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 36291373 - 36291538
Alignment:
78 cgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaat 177  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||| |  | ||| ||||| ||||||||||||||||            |||||||||    
36291373 cgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaat 36291472  T
178 ctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    || |||||| | |||| ||||||  |||  |||||||||||| |||||||||||||||||||||||    
36291473 ctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 19985934 - 19986106
Alignment:
71 cgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnntt 170  Q
    |||||| ||||| |||||||||| |||  ||||||| ||||||||||||||||| | |  |||||||||  ||||| |||||||||            ||    
19985934 cgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaattt 19986033  T
171 gggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||| ||||| |||||| |||||||||||||  ||||| ||||||||||| |||||||||||| ||||||||||    
19986034 gggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

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Target: chr5; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 43068896 - 43069044
Alignment:
95 ccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacg 194  Q
    |||| ||||||||||||||||| ||||||| ||   |||||||||  |||||||||||||||            |||||||||||||||||| | ||| |    
43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
195 caaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
     |||||  ||| |||||||||||||||||||||||| ||| ||||||||    
43068996 taaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataat 112  Q
    ||||||||||| |||||||||| | ||||||||||||| | ||||||| |||||    
14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 34948945 - 34948761
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||    
34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 34948846  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
34948845 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 13837801 - 13837985
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||||||||||||||||||| |||| |||  |||||| |||||||||| |||||| |||  |||||||||| ||| ||||||||||    
13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacattta 13837900  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
13837901 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 398597 - 398784
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| |||||||||||||||||||||    
398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 398696  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 ||||||||| |||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
398697 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 18339106 - 18339273
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||   | | ||||||  ||||||||| ||||            |||||||    
18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 18339205  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||    
18339206 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 28996730 - 28996897
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||  ||||||| ||||||||||| ||||| ||   ||| |||||   ||||||||| ||||            |||||||    
28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggca 28996829  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
28996830 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 243
Target Start/End: Original strand, 29743289 - 29743450
Alignment:
82 cccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctga 181  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||| ||   ||| ||||| ||||||||||||||||            |||||||||||||    
29743289 cccgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctga 29743388  T
182 aaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||| | |||||||||||  ||| ||||||||||||||||||||| || ||| ||||||||    
29743389 aaattcttacacgcaaataggtctcggaattttatttagcacactagtgccggattcatctc 29743450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 31028531 - 31028451
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttac 156  Q
    |||||||||| ||||| |||||| ||||||| ||||||||||||||||| |    ||| ||||||||||||||||||||||    
31028531 ggcgaccccgagcggttgcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttac 31028451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 33229410 - 33229336
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||| | ||||| |||||  ||| || ||||||||||||||||||||| ||| ||||||||    
33229410 ttgggcaatctgaaaattcttacacgtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 13647017 - 13647053
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataat 112  Q
    ||||||||||||||||||||||| ||||||| |||||    
13647017 ggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 29728570 - 29728386
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnn 158  Q
    ||||||||||| |||||||||||||||| ||||||||||  ||||||| |||| |||||||||||| |||  ||||||||||||||||||||||||||      
29728570 gggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaa 29728471  T
159 nnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
              |||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
29728470 aaagaaaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 15838270 - 15838449
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||  ||| |||||  |||||||||||||||       
15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 15838369  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
             |||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
15838370 agaaaaat-ttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 3648984 - 3648794
Alignment:
53 aaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacat 152  Q
    ||||| ||||||||||| |||||||||| || || | ||||||||| ||||||| ||||||||| ||||||| |||  |||||||||| |||||||||||    
3648984 aaccaggggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacat 3648885  T
153 ttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||            ||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||    
3648884 ttacaaaaagaaaattttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 16788188 - 16788025
Alignment:
80 accccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatct 179  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||||||||||  ||||||||| ||||            |||||||||||    
16788188 accccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatct 16788089  T
180 gaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
     |||| | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
16788088 taaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 39914495 - 39914681
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    ||||| |||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| |||||||||||||||||||||    
39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 39914594  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 ||||||||| |||||||||||||| | |||||  |||||||||||||||| ||||||||||||| | ||||||||    
39914595 -taaaaaaaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctc 39914681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 34136993 - 34136825
Alignment:
75 tggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggc 174  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||  |||||||||   ||||||||| ||||            ||||||    
34136993 tggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc 34136894  T
175 aatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||| |||||||||||||  ||| | ||||||||||||||||| ||||| |||||||||||    
34136893 aatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctc 34136825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 4404008 - 4404175
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||  ||||||||||  ||||||| | ||||            |||||||    
4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggca 4404107  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||| |||||| |||||||||||||  ||| ||||||||||||||||||| ||||| |||||||||||    
4404108 atctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 4404175  T

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Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 23402108 - 23402275
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||| |||| ||   ||||||||||  ||||||||| ||||            |||||||    
23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 23402207  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| | ||||||||||| |||||||||||| ||||||||||    
23402208 atctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 36408551 - 36408718
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||||||| |    |||||||||  |||||||||||||||            || ||||    
36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggca 36408650  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    || |||||||| | |||||| ||||  |||  |||||||||||| |||||||||| ||| ||||||||    
36408651 atttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 42231030 - 42231104
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||| |||||||| ||| | |||||||  |||  ||||||||||||||||||||||||||| ||||||||    
42231030 ttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 9877313 - 9877374
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattg 230  Q
    |||||||||||||||||| ||||| |||||||  ||| | ||||||||||||||||||||||    
9877313 ttgggcaatctgaaaattctcacatgcaaataggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 2729363 - 2729288
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacaca 151  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| |||||||||    | |||||||| ||||||||||    
2729363 ggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacaca 2729288  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 40470509 - 40470475
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||    
40470509 aattttatttagcacactattgacgggttcatctc 40470475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 7433425 - 7433609
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| |||||||| ||||||||||||||||||  ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||    
7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacattta 7433524  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcat 240  Q
    |            ||||||||||| ||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||    
7433525 caaaaagaaaattttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 42311125 - 42310941
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnn 158  Q
    ||||||||||| |||||||||||||| | || |||||||| ||||||| ||||||||||||||||| |||  |||||||||| | |||||||||||||      
42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaa 42311026  T
159 nnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
              ||||||||||||||||||||||||||||||||  ||||| |||||||||||| || |||||||||||||||||||    
42311025 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 26144235 - 26144422
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| |||||||||||||||||||||    
26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 26144334  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 ||||||||| |||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
26144335 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26144422  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 243
Target Start/End: Complemental strand, 32982236 - 32982056
Alignment:
63 ggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnn 162  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| ||   ||| |||||| |||||||| ||||||          
32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaag 32982137  T
163 nnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
          |||| |||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||| | ||||||||    
32982136 aaaaatttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 3828988 - 3829150
Alignment:
80 accccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatct 179  Q
    ||||||| ||||||| |||  |||||| ||||||||||||||||||||   ||||||||| ||||||||||| ||||            |||||||||||    
3828988 accccggacggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatct 3829087  T
180 gaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||| ||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||    
3829088 gaaaattttcatacgcaaataggtct-ggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 17445313 - 17445479
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    |||||||||  |||||||||||| || ||||||||||||||| |||||| |    |||||||||   ||||||||| ||||            |||||||    
17445313 ggcgaccccatgcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 17445412  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatct 242  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||| |||||||||||||||||    
17445413 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 35907552 - 35907719
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||| ||||||||||||||| || |||| ||||||||||||||||| ||   ||||||||||  ||||  ||| ||||            ||||| |    
35907552 ggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttgggta 35907651  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||||| |||||||| |||||||||    
35907652 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctc 35907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 321451 - 321377
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||| ||| | |||||||  ||| ||||||||||||| |||| ||||||||||||||||||    
321451 ttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 23313218 - 23313319
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataattt-ttgcacattaaacttgacccaaaagctcattaacacattt 154  Q
    |||||||||||||| |||||||||| | |||||||| |||||| ||||||  || |||| |||||||||| |||  ||  ||||| ||||||||||||||    
23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacattt 23313317  T
155 ac 156  Q
    ||    
23313318 ac 23313319  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 33489839 - 33489873
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||    
33489839 aattttatttagcacactattgacgggttcatctc 33489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 41972290 - 41972256
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||    
41972290 aattttatttagcacactattgacgggttcatctc 41972256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 41972440 - 41972394
Alignment:
77 gcgaccccgggcggtcgcccggtctcgatcaataatttttgcacatta 124  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||    
41972440 gcgaccccgggcggtcgcctgg-ctcgatcgataatttttgcacatta 41972394  T

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Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 34084305 - 34084122
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnn 159  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |  ||| |||||  |||||||||||||||       
34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaa 34084206  T
160 nnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
             ||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
34084205 aagaaaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctc 34084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 22968631 - 22968444
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||| | ||||||||||||||||| |||| ||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacattta 22968532  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            ||||||||||| |||||||||||||| |||||  ||||| |||||||||||||||||||||||| | ||||||||    
22968531 caaaaagaaaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 22968444  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 6269613 - 6269427
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||||| ||| | |||| |||||||||||| |||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||||    
6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 6269514  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatct 242  Q
    |            |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| | |||||||    
6269513 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 19390126 - 19390313
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||| ||||||| ||| ||||||||||||||||||| ||||  |||||| ||||||||||||||||| |||  ||| |||||   |||||||||||||    
19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacattta 19390225  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| | ||||||||    
19390226 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 19390313  T

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Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 40081922 - 40081741
Alignment:
59 gggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnn 158  Q
    ||||||||||| ||||||||||| | ||  |||||||||| ||||||| |||||||||| |||||| |||  ||| ||||||||||||||||||||||      
40081922 gggcggttctaccgtatggcgactctgga-ggtcgcccgggctcgatcgataatttttgaacattagactcaacc-aaaagctcattaacacatttacaa 40081825  T
159 nnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
              ||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
40081824 aaagaaaaatttgggcaatttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 39771770 - 39771957
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| |||| || ||||||||||||||||| |||  |||||||||| ||||||||||||||    
39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 39771869  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 |||||||||||||||||||||||||| |||||  ||||| ||||||||||  |||||||||||| | ||||||||    
39771870 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 39771957  T

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Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 45182981 - 45183148
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||   ||||||||||  ||||||||| ||||            |||||||    
45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45183080  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||    
45183081 atctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

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Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 243
Target Start/End: Complemental strand, 11018401 - 11018212
Alignment:
54 accatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatt 153  Q
    |||||||||||||  | |||  |||||| |||||||||||||| | ||||||| ||||||||||||||||| |||  ||||||||||  ||||||||| |    
11018401 accatgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacact 11018302  T
154 tacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||            |||||||||||||||||| |||||||||||||  |||  |||||||||||||||||| |||||||||||||||||    
11018301 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

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Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 27935177 - 27935345
Alignment:
75 tggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggc 174  Q
    |||| |||| |||| ||||||||| ||||||| ||||||||||||||||||||   ||||||||||||||||||||| ||||            ||||||    
27935177 tggcaaccctgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggc 27935276  T
175 aatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||| ||| ||| |||||  ||| |||||||||||||||| ||||||||||||||||||||    
27935277 aatctgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

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Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 6931061 - 6930894
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||| ||||| |    ||||||||||  ||||||||||||||            || ||||    
6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggca 6930962  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||    
6930961 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 6930894  T

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Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 33040953 - 33041120
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||| ||| ||||||  |||||||||||| |||| ||   ||||||||||| ||||||||| ||||            |||  ||    
33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaaca 33041052  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    || |||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
33041053 atttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

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Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 45335875 - 45336041
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||| ||||||||||||||| ||| ||| ||||||||| ||||||| ||   ||| ||||| ||||||||||||||||             ||||||    
45335875 ggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaag-tcattaacacatttacaaaaagaaaaatctgggca 45335973  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| | |||||||||||  ||||||||||||||||||||||||| || ||| ||||||||    
45335974 atctgaaaattcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctc 45336041  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 6503756 - 6503569
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||  | |||  ||||||||||||||||||||||| ||||||| || ||||||||| |||| |||  ||||||||||  |||| |||| |||    
6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacactta 6503657  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |            ||  |||||||||||||| ||||| |||||||  ||| ||| ||||||||||||||| ||||| |||||||||||    
6503656 caaaaagaaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctc 6503569  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 35514355 - 35514429
Alignment:
169 ttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||| |||| |||||||| |||| ||||||||  ||| |||||||||||| ||||||||||||||||||||||||    
35514355 ttggacaatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 22922141 - 22922209
Alignment:
60 ggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaact 128  Q
    |||||||| | |||||||||| ||||||||||||| ||| ||||||| || ||||||||||||||||||    
22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacattaaact 22922209  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 22922214 - 22922262
Alignment:
195 caaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||    
22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 19565668 - 19565517
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||| |||||||||||||||||  || ||| ||||||||||||||||| ||   ||| ||||   |||||||||||||||            |||| ||    
19565668 ggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggaca 19565569  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacacta 227  Q
    ||||||||||| | |||||||||||  ||| |||||||||||||||||||||    
19565568 atctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 5135421 - 5135455
Alignment:
209 aattttatttagcacactattgacgggttcatctc 243  Q
    |||||||||||||||||||||||||||||||||||    
5135421 aattttatttagcacactattgacgggttcatctc 5135455  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 5354709 - 5354757
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacatta 124  Q
    ||||||||||||||||||||||| |||||||  |||||||  |||||||    
5354709 ggcgaccccgggcggtcgcccgggctcgatccttaattttctcacatta 5354757  T

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Target: scaffold0069 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 17820 - 18009
Alignment:
54 accatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatt 153  Q
    |||||||||||||||| ||| ||||||||||| ||| ||| |||| ||||||| ||||||||||||||||| |||  |||||||||| ||||||||||||    
17820 accatgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatt 17919  T
154 tacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||            |||||||||||||||||||||||| | |||||  ||||| |||||||||||||||||||||||| | ||||||||    
17920 tacaaaaagaaaaatttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 18009  T

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Target: scaffold0002 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 480644 - 480457
Alignment:
56 catgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacattta 155  Q
    |||||||||||| | ||| | |||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| |||||||||||||||||||||    
480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 480545  T
156 cnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
                 ||||||||| |||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
480544 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 480457  T

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Target: scaffold2142 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 243
Target Start/End: Original strand, 499 - 689
Alignment:
53 aaccatgggcggttctagcgtatggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacat 152  Q
    ||||||||||||||| | ||| | |||| ||||||||||||||||| ||||||| ||||||||||||||||| |||  ||| ||||||||||||||||||    
499 aaccatgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacat 598  T
153 ttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    |||             ||||||||| |||||||||||||||| |||||  |||||||||||||||| ||||||||||||| | ||||||||    
599 ttataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 689  T

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Target: scaffold0502 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 5230 - 5397
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||   | | ||||||  ||||||||| ||||            |||||||    
5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 5329  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| ||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||    
5330 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

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Target: scaffold0041 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 52944 - 53092
Alignment:
95 ccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggcaatctgaaaattgtcacacg 194  Q
    |||| ||||||| ||||||||||||||||| | || ||||||||||  ||||||||||||||            |||| ||||||||||||| ||||| |    
52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 53043  T
195 caaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||  ||| |||||||||||||||||||||||||||||||||||||    
53044 caaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

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Target: scaffold0154 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 31480 - 31647
Alignment:
76 ggcgaccccgggcggtcgcccggtctcgatcaataatttttgcacattaaacttgacccaaaagctcattaacacatttacnnnnnnnnnnnnttgggca 175  Q
    ||||||||| | ||||||||||| ||||||| |||||||||||||| || ||   |||||||||| |||||||||| ||||            |||| ||    
31480 ggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggaca 31579  T
176 atctgaaaattgtcacacgcaaatatatcttggaattttatttagcacactattgacgggttcatctc 243  Q
    ||||||||||| |||| ||||||||  ||| | |||||||||| ||||||||||||| ||||||||||    
31580 atctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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