View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_high_5 (Length: 445)
Name: NF0342_high_5
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_high_5 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 43435801 - 43435402
Alignment:
| Q |
45 |
catcatagactgccttggaaagagtataccctgatgactcaaatttcttagctaccctgaaaactaaatccaaatttggcttatagcttgcagagatgct |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
43435801 |
catcatagactgccttggaaagagtataccctgatgactcgaatttcttagctaccctgaaaactaaatccaaattcggcttatcgcttgcagagatgct |
43435702 |
T |
|
| Q |
145 |
ctttaaaagcatgatgcagtctggaactgatggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttga |
244 |
Q |
| |
|
|||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435701 |
ctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttga |
43435602 |
T |
|
| Q |
245 |
agctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaactcctcaattgactccatcc |
344 |
Q |
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|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
43435601 |
agcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctcctcaataatactccaaaactcctcaattgattccatcc |
43435502 |
T |
|
| Q |
345 |
ttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaacacttatatgcctttaagggact |
444 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
43435501 |
ttggaagaactctagcaactgcattataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggact |
43435402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 43443995 - 43443596
Alignment:
| Q |
45 |
catcatagactgccttggaaagagtataccctgatgactcaaatttcttagctaccctgaaaactaaatccaaatttggcttatagcttgcagagatgct |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
43443995 |
catcatagactgccttggaaagagtataccctgatgactcgaatttcttagctaccctgaaaactaaatccaaattcggcttatcgcttgcagagatgct |
43443896 |
T |
|
| Q |
145 |
ctttaaaagcatgatgcagtctggaactgatggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttga |
244 |
Q |
| |
|
|||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43443895 |
ctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttga |
43443796 |
T |
|
| Q |
245 |
agctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaactcctcaattgactccatcc |
344 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
43443795 |
agcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctcctcaataatactccaaaactcctcaattgattccatcc |
43443696 |
T |
|
| Q |
345 |
ttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaacacttatatgcctttaagggact |
444 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
43443695 |
ttggaagaactctagcaactgcattataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggact |
43443596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 43427296 - 43426897
Alignment:
| Q |
45 |
catcatagactgccttggaaagagtataccctgatgactcaaatttcttagctaccctgaaaactaaatccaaatttggcttatagcttgcagagatgct |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||| | ||| |
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| T |
43427296 |
catcatagactgccttggaaagagtataccctgttgactcaaatttcttagttaccctgaaaactaaatccaaatctggcttatcctttgtagataggct |
43427197 |
T |
|
| Q |
145 |
ctttaaaagcatgatgcagtctggaactgatggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttga |
244 |
Q |
| |
|
||||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| || |
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| T |
43427196 |
ctttaaaagcacaatgcaatccggagctgtaggcttatatgaactatccatcatatgctcgtaaagcttgacactgtcctccatcatcctattatttaga |
43427097 |
T |
|
| Q |
245 |
agctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaactcctcaattgactccatcc |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
43427096 |
agctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaacttctcaattgactccattc |
43426997 |
T |
|
| Q |
345 |
ttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaacacttatatgcctttaagggact |
444 |
Q |
| |
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| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| ||||||| |||||||| ||||| |
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| T |
43426996 |
taggaagaactctagcaactgcattataagtcactgtattctgtagataaccagattgctttccaacccaatgaaaaaacttataagcctttaaaggact |
43426897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 168 - 421
Target Start/End: Complemental strand, 43422595 - 43422342
Alignment:
| Q |
168 |
gaactgatggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgta |
267 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| |||| |||||||| |||||||||| |||||||| ||||||| || |||| | | |||||| || || |
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| T |
43422595 |
gaaccgatggctcatatgaaccatccatcataagctcgtaaagcttaacagcatccttcatcatctgattctttacaaactgcattgttatcttcatata |
43422496 |
T |
|
| Q |
268 |
agtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaactcctcaattgactccatccttggaagaactatagcaactgca |
367 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||| |
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|
| T |
43422495 |
agtatcaatctccaattcataattcacactcttcatctccgcaagaatactccaaaactcctcaattgaatccatcctagcaagaactctagcaactgca |
43422396 |
T |
|
| Q |
368 |
ttataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaa |
421 |
Q |
| |
|
|| |||||||| | ||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
43422395 |
ttgtaagtcacagcattatgttgataaccagattgcttcccaacccaataaaaa |
43422342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 45 - 444
Target Start/End: Complemental strand, 21264 - 20882
Alignment:
| Q |
45 |
catcatagactgccttggaaagagtataccctgatgactcaaatttcttagctaccctgaaaactaaatccaaatttggcttatagcttgcagagatgct |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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|
| T |
21264 |
catcatagactgccttggaaagagtataccctgtttactcgaatttcttagctaccctgaaaactaaatccaaatccagcttatcgcttgcagatgtgct |
21165 |
T |
|
| Q |
145 |
ctttaaaagcatgatgcagtctggaactgatggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttga |
244 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21164 |
ctttaaaagcataatgcaatccagaactgatggcttatatgaactatccatcatatgctcataaagcttgacaacatcctccatcatcttattcttttga |
21065 |
T |
|
| Q |
245 |
agctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaactcctcaattgactccatcc |
344 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
21064 |
agctgcctcgatatc-----------------ctccaattcatgacagacactcttcgtctcctcaagaatactccaaaactcttcaattgactccactc |
20982 |
T |
|
| Q |
345 |
ttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaacacttatatgcctttaagggact |
444 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| ||||||||| ||||||||| || || ||| ||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
20981 |
taggaagaactctagcaactgcattataagtaactgtattccgttgataactagatttctttccaacccaatgaaaaaacttataagcctttaaaggact |
20882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 45 - 443
Target Start/End: Original strand, 40186008 - 40186396
Alignment:
| Q |
45 |
catcatagactgccttggaaagagtataccc--tgatgactcaaatttcttagctaccctgaaaactaaatccaaatttggcttatagcttgcagagatg |
142 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||| ||||| || |||| ||| |||| |
|
|
| T |
40186008 |
catcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccctgaaaaataaatccaaacctggctcatcgctttcagcgatg |
40186107 |
T |
|
| Q |
143 |
ctctttaaaagcatgatgcagtctggaactgatggcttatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattctttt |
242 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||| |||||| || |
|
|
| T |
40186108 |
ttctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgctcatgaagcccg---------tccatcatcctattctctt |
40186198 |
T |
|
| Q |
243 |
gaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaaactcctcaattgactccat |
342 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
40186199 |
gaagctgcctcgatatctttatggaagtattgagatccaattcatgaccgacactcttcatctcctc---gatactccaaaactcctcaattgagtccat |
40186295 |
T |
|
| Q |
343 |
ccttggaagaactatagcaactgcattataagtcactgtattctgttgataaccagcttgcttcccaacccaatgaaaacacttatatgcctttaaggga |
442 |
Q |
| |
|
| | | ||||||| | ||||| ||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||| || |||||||| ||| |
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|
| T |
40186296 |
cttagcaagaactcttgcaacataattgtaagtcacggtattatgttgataaccagattgcttcccaacccaatgaaaaaacttgtaagcctttaaagga |
40186395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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