View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_1 (Length: 499)
Name: NF0342_low_1
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 8394891 - 8395341
Alignment:
| Q |
12 |
agctgttgcaacgataataatatctcaaacataccgcacatgttcatcttgcaaaacgggcattctcggcttcctgagttggacttgttgttgcagtata |
111 |
Q |
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| T |
8394891 |
agctgttgcaacgataataatatctcaaacataccgcacatgttcatcttgcaaaacaggcattcttggcttcctgagttggacttgttgttgcagtata |
8394990 |
T |
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| Q |
112 |
taattcctatcattgatcaagtcttggttgatatggttcgccggtgggatatttttcaaggaattgaagcaccgaattcgcttaaatttcagtcaagaac |
211 |
Q |
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| T |
8394991 |
taattcctatcattgatcaagtcttggttgatatggtttgccggtgggatatttttcaaggaattgaagcaccgaattcgcataaatttcagtcgggaac |
8395090 |
T |
|
| Q |
212 |
gcggatgcagatggataaatgtggatgcttttatcgttgctagggtttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcac |
311 |
Q |
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| T |
8395091 |
gcggatgcggatggataaatgtggatgcttttatcgttgctagggtttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcac |
8395190 |
T |
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| Q |
312 |
tgnnnnnnnnnnnngaacagatatttggagggacgagggtagcaatgaaataagaaacttgtgatcctcgtatatatacttttgtatttatttcatctcc |
411 |
Q |
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| T |
8395191 |
tgtttttatattttgaacagatatttggagggacgagggtagcaatgaaataagaaacttgtgatcctcgtatatatacttttgtatttatttcatctcc |
8395290 |
T |
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| Q |
412 |
ttttgttactttttctgacgaaaattccttgtactactttgttttcagatt |
462 |
Q |
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| T |
8395291 |
ttttgttactttttctgacgaaaattccttgtactactttgttttcagatt |
8395341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 313
Target Start/End: Complemental strand, 8406633 - 8406484
Alignment:
| Q |
159 |
gatatttttcaaggaattgaagcaccgaattcgcttaaatttcagtcaagaacgcggatgcagatggataaatgtgg-atgcttttatcgttgctagggt |
257 |
Q |
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|||| |||||||| |||||||||| |||||||| ||||||||||| ||||||||||| ||| |||| || |||||||||| |||||||||| |
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| T |
8406633 |
gataattttcaagaaattgaagcatggaattcgcataaatttcagttgggaacgcggatggaga------aatgcggtatgcttttatttttgctagggt |
8406540 |
T |
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| Q |
258 |
ttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcactg |
313 |
Q |
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| T |
8406539 |
ttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcactg |
8406484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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